Variant report

Variant	rs2807234
Chromosome Location	chr10:25511679-25511680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10508689	0.81[JPT][hapmap]
rs11014431	0.81[CHB][hapmap]
rs11014435	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs11014474	0.85[JPT][hapmap]
rs11818773	0.80[CHB][hapmap]
rs12411980	0.87[CHB][hapmap]
rs12411993	0.86[CHB][hapmap]
rs1334058	0.82[JPT][hapmap]
rs1339996	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs1339998	0.98[EUR][1000 genomes]
rs1339999	0.87[JPT][hapmap]
rs16925456	0.82[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs16925458	0.82[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap]
rs16925470	0.85[JPT][hapmap]
rs16925472	0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1856701	0.90[EUR][1000 genomes]
rs2182353	0.82[CEU][hapmap];0.81[JPT][hapmap];0.97[EUR][1000 genomes]
rs2248279	1.00[CEU][hapmap];0.86[JPT][hapmap];0.97[EUR][1000 genomes]
rs2765697	0.87[CHB][hapmap]
rs2765699	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs2765701	0.81[JPT][hapmap]
rs2765702	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2765703	0.82[CEU][hapmap];0.87[JPT][hapmap];0.97[EUR][1000 genomes]
rs2765704	1.00[CEU][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes]
rs2765705	1.00[CEU][hapmap];0.87[JPT][hapmap];0.97[EUR][1000 genomes]
rs2765706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2765707	0.82[CEU][hapmap];0.87[JPT][hapmap]
rs2765708	0.97[EUR][1000 genomes]
rs2765709	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2765710	0.82[CEU][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes]
rs2765711	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2765712	0.98[EUR][1000 genomes]
rs2791324	1.00[CEU][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2791326	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs2791327	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs2791328	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2807230	1.00[CEU][hapmap];0.86[JPT][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2807231	1.00[CEU][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2807232	1.00[CEU][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2807233	1.00[CEU][hapmap];0.87[JPT][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2807235	1.00[CEU][hapmap];0.87[JPT][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2807236	1.00[CEU][hapmap];0.86[JPT][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2807237	0.82[CEU][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes]
rs2807238	1.00[CEU][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2807240	0.92[EUR][1000 genomes]
rs2807241	1.00[CEU][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes]
rs4747516	0.85[JPT][hapmap]
rs7081232	0.82[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes]
rs7086304	0.82[CEU][hapmap];0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv894971	chr10:25403234-25522280	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25505400-25515600	Weak transcription	Brain Substantia Nigra	brain
2	chr10:25509600-25515800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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