Variant report

Variant	rs12411980
Chromosome Location	chr10:25481448-25481449
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10828763	0.81[JPT][hapmap]
rs11014431	0.82[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap]
rs11014435	0.87[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs11818773	0.94[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12411993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1339996	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs16925456	0.85[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs16925458	0.85[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2765697	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2765699	0.87[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs2765706	0.88[CHB][hapmap]
rs2765711	0.81[CHB][hapmap]
rs2807234	0.87[CHB][hapmap]
rs7081232	0.85[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7086304	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap]
rs7923288	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv894971	chr10:25403234-25522280	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2760160	chr10:25473747-25496153	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25481200-25485200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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