Variant report
Variant | rs2798323 |
---|---|
Chromosome Location | chr6:118992322-118992323 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1016095 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10457336 | 0.81[ASN][1000 genomes] |
rs10457341 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10457344 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10457345 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10484287 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1051429 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10872167 | 0.89[CHB][hapmap] |
rs11153752 | 0.89[CHB][hapmap];0.88[JPT][hapmap] |
rs11153754 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs11153758 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs11153761 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11153763 | 0.89[CHB][hapmap];0.88[JPT][hapmap] |
rs11153768 | 0.89[CHB][hapmap] |
rs11754973 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs11755121 | 0.84[CHB][hapmap];0.88[JPT][hapmap] |
rs11756983 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs11968176 | 0.83[CHB][hapmap] |
rs11968351 | 0.83[CHB][hapmap];0.88[JPT][hapmap] |
rs12153824 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs12153938 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs12194555 | 0.89[CHB][hapmap];0.87[JPT][hapmap] |
rs12196194 | 0.85[ASN][1000 genomes] |
rs12199463 | 0.89[CHB][hapmap];0.87[JPT][hapmap] |
rs12204456 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12206329 | 0.89[CHB][hapmap];0.88[JPT][hapmap] |
rs12208253 | 0.89[CHB][hapmap];0.88[JPT][hapmap] |
rs12661338 | 0.84[CHB][hapmap] |
rs1318050 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs13192336 | 0.89[CHB][hapmap];0.88[JPT][hapmap] |
rs13213527 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs13220480 | 0.89[CHB][hapmap];0.87[JPT][hapmap] |
rs1547326 | 0.87[ASN][1000 genomes] |
rs17080423 | 0.82[ASN][1000 genomes] |
rs1808098 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1891712 | 0.80[CHB][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1936059 | 0.83[ASN][1000 genomes] |
rs2096265 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2157569 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2181513 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2213856 | 0.89[CHB][hapmap];0.88[JPT][hapmap] |
rs2213858 | 0.87[ASN][1000 genomes] |
rs2356492 | 0.89[CHB][hapmap];0.88[JPT][hapmap] |
rs2356493 | 0.87[ASN][1000 genomes] |
rs2356500 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2356502 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs25421 | 0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs25423 | 0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2638530 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2638532 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2638533 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2798321 | 0.94[CHB][hapmap];0.87[JPT][hapmap] |
rs2798325 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2798329 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs3734381 | 0.87[JPT][hapmap] |
rs3734382 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs3752581 | 0.89[CHB][hapmap];0.88[JPT][hapmap] |
rs3862828 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4027728 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4307206 | 0.83[CHB][hapmap] |
rs4412243 | 0.82[ASN][1000 genomes] |
rs4502975 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4945623 | 0.89[CHB][hapmap] |
rs4946348 | 0.90[ASN][1000 genomes] |
rs4946349 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4946351 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs55868726 | 0.85[ASN][1000 genomes] |
rs6569020 | 0.87[CHB][hapmap] |
rs6569021 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6569022 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6569026 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6902812 | 0.88[CHB][hapmap] |
rs6906287 | 0.83[CHB][hapmap] |
rs6909211 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6923686 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6925641 | 0.89[CHB][hapmap];0.87[JPT][hapmap] |
rs6928336 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6928957 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6929390 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs763254 | 0.83[CHB][hapmap] |
rs763255 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7740645 | 0.89[CHB][hapmap];0.88[JPT][hapmap] |
rs7740922 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7741644 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7749208 | 0.87[ASN][1000 genomes] |
rs7749356 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7749694 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7751213 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7751467 | 0.89[CHB][hapmap];0.88[JPT][hapmap] |
rs7754272 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7754293 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7757337 | 0.87[ASN][1000 genomes] |
rs7757407 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7759088 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7761717 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7761996 | 0.87[ASN][1000 genomes] |
rs7762990 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7763904 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7764388 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs7769001 | 0.88[CHB][hapmap] |
rs794857 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs794859 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs794861 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs9285430 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9320663 | 0.94[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes] |
rs9320665 | 0.94[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes] |
rs9401081 | 0.84[ASN][1000 genomes] |
rs9481815 | 0.87[ASN][1000 genomes] |
rs9481819 | 0.87[ASN][1000 genomes] |
rs9481832 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs9481840 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9489406 | 0.87[ASN][1000 genomes] |
rs9489414 | 0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9489417 | 0.85[ASN][1000 genomes] |
rs9489419 | 0.87[ASN][1000 genomes] |
rs9489420 | 0.87[ASN][1000 genomes] |
rs9489421 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs9489424 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9489425 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9489432 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9489437 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9489438 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9489439 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9489446 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs9489448 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs9489449 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs9489454 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs9489455 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs9489456 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs9489459 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs9489461 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs9489478 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9489486 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9489487 | 0.80[CHB][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9689896 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs973944 | 0.88[CHB][hapmap];0.87[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv532051 | chr6:118551027-119044197 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
2 | nsv1020463 | chr6:118593028-119146363 | Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
3 | nsv1025403 | chr6:118635123-119122551 | Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
4 | nsv1025456 | chr6:118669672-119058789 | Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
5 | nsv1027444 | chr6:118687556-119121660 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
6 | nsv538428 | chr6:118687556-119121660 | Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
7 | nsv949321 | chr6:118692304-119137658 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
8 | nsv432958 | chr6:118692307-119010307 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
9 | nsv1034448 | chr6:118698169-119016383 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
10 | nsv1025097 | chr6:118699752-119058789 | Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
11 | nsv532052 | chr6:118711850-119057295 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
12 | nsv432959 | chr6:118716318-119010307 | Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
13 | nsv604556 | chr6:118722589-119065365 | Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
14 | nsv949416 | chr6:118772508-119033063 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
15 | nsv948980 | chr6:118772508-119137658 | Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
16 | nsv604559 | chr6:118786486-119113317 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
17 | nsv1022865 | chr6:118786586-119058789 | ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
18 | nsv1020405 | chr6:118786586-119241006 | ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:118986400-118992400 | Enhancers | Primary T helper cells PMA-I stimulated | -- |
2 | chr6:118986400-118992400 | Enhancers | Skeletal Muscle Female | skeletal muscle |
3 | chr6:118986400-118994800 | Enhancers | Primary T helper naive cells fromperipheralblood | blood |
4 | chr6:118986400-118995000 | Enhancers | Primary T helper cells fromperipheralblood | blood |
5 | chr6:118986400-118995400 | Enhancers | Primary T killer naive cells fromperipheralblood | blood |
6 | chr6:118986400-119001800 | Weak transcription | Primary mononuclear cells fromperipheralblood | Blood |
7 | chr6:118987000-118993000 | Weak transcription | Primary T cells fromperipheralblood | blood |
8 | chr6:118989200-118992600 | Genic enhancers | Primary T cells from cord blood | blood |
9 | chr6:118990400-119000200 | Weak transcription | Primary T helper 17 cells PMA-I stimulated | -- |
10 | chr6:118990600-119025400 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
11 | chr6:118991000-118999400 | Weak transcription | Stomach Mucosa | stomach |
12 | chr6:118991000-119000200 | Weak transcription | Primary T regulatory cells fromperipheralblood | blood |
13 | chr6:118991200-119000800 | Weak transcription | Primary T cells effector/memory enriched fromperipheralblood | blood |
14 | chr6:118991200-119001000 | Weak transcription | Fetal Thymus | thymus |
15 | chr6:118991200-119004400 | Weak transcription | Primary B cells from cord blood | blood |
16 | chr6:118991400-118992800 | Weak transcription | Psoas Muscle | Psoas |
17 | chr6:118991400-118994200 | Weak transcription | Primary T helper memory cells from peripheral blood 1 | blood |
18 | chr6:118991800-118992600 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
19 | chr6:118991800-118994200 | Weak transcription | Primary T killer memory cells from peripheral blood | blood |
20 | chr6:118992200-118992400 | Enhancers | Primary T helper naive cells from peripheral blood | blood |
21 | chr6:118992200-118994000 | Weak transcription | Primary T helper memory cells from peripheral blood 2 | blood |
22 | chr6:118992200-118998000 | Weak transcription | K562 | blood |