Variant report

Variant	rs2800615
Chromosome Location	chr9:15118346-15118347
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1746330	0.83[AFR][1000 genomes]
rs1780161	0.83[AFR][1000 genomes]
rs2761103	0.80[AFR][1000 genomes]
rs2761110	0.80[AFR][1000 genomes]
rs2761111	0.80[AFR][1000 genomes]
rs2761114	0.80[AFR][1000 genomes]
rs2800569	0.80[AFR][1000 genomes]
rs2800614	0.83[AFR][1000 genomes]
rs2800616	0.83[AFR][1000 genomes]
rs2800619	0.83[AFR][1000 genomes]
rs2800620	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv892623	chr9:15079847-15127129	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15114600-15121200	Enhancers	Thymus	Thymus
2	chr9:15115000-15124400	Enhancers	Fetal Thymus	thymus
3	chr9:15116000-15120800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:15116400-15120800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:15116400-15121000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:15116600-15118400	Enhancers	Fetal Muscle Leg	muscle
7	chr9:15116600-15120800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:15116600-15121200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:15116600-15121200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:15116600-15121600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:15116800-15120800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:15116800-15121200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:15116800-15121200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:15117000-15121200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr9:15118000-15120000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:15118000-15121800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:15118000-15126800	Weak transcription	Fetal Heart	heart
18	chr9:15118200-15121200	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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