Variant report

Variant	rs2800614
Chromosome Location	chr9:15117791-15117792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:15117708..15120327-chr9:15124924..15126439,2	MCF-7	breast:
2	chr9:15117245..15119080-chr9:15120315..15121968,2	K562	blood:
3	chr9:15111864..15114810-chr9:15116682..15119632,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10116796	0.84[AFR][1000 genomes]
rs10120028	0.84[AFR][1000 genomes]
rs10121250	0.84[AFR][1000 genomes]
rs10122944	0.84[AFR][1000 genomes]
rs10810345	0.90[AFR][1000 genomes]
rs10810346	0.84[AFR][1000 genomes]
rs1746330	1.00[AFR][1000 genomes]
rs1780152	0.90[AFR][1000 genomes]
rs1780161	1.00[AFR][1000 genomes]
rs1936713	0.84[AFR][1000 genomes]
rs1936714	0.84[AFR][1000 genomes]
rs1936720	0.84[AFR][1000 genomes]
rs1936721	0.84[AFR][1000 genomes]
rs2105414	0.84[AFR][1000 genomes]
rs2105415	0.84[AFR][1000 genomes]
rs2186027	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2382516	0.84[AFR][1000 genomes]
rs2489541	0.84[AFR][1000 genomes]
rs2761092	0.90[AFR][1000 genomes]
rs2761103	0.97[AFR][1000 genomes]
rs2761110	0.97[AFR][1000 genomes]
rs2761111	0.97[AFR][1000 genomes]
rs2761114	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2761117	0.94[AFR][1000 genomes]
rs2800569	0.97[AFR][1000 genomes]
rs2800592	1.00[YRI][hapmap]
rs2800597	0.90[AFR][1000 genomes]
rs2800615	0.83[AFR][1000 genomes]
rs2800616	1.00[AFR][1000 genomes]
rs2800619	1.00[AFR][1000 genomes]
rs2800620	1.00[AFR][1000 genomes]
rs4237137	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs4275306	0.84[AFR][1000 genomes]
rs4305996	0.94[AFR][1000 genomes]
rs4307425	0.84[AFR][1000 genomes]
rs4373617	0.84[AFR][1000 genomes]
rs4401969	0.84[AFR][1000 genomes]
rs4451417	0.84[AFR][1000 genomes]
rs4517211	0.84[AFR][1000 genomes]
rs4526461	0.84[AFR][1000 genomes]
rs4559332	0.88[AFR][1000 genomes]
rs4579616	0.84[AFR][1000 genomes]
rs4740601	0.84[AFR][1000 genomes]
rs4741457	0.84[AFR][1000 genomes]
rs4741458	0.90[AFR][1000 genomes]
rs4741459	0.84[AFR][1000 genomes]
rs4741461	0.84[AFR][1000 genomes]
rs6474891	0.84[AFR][1000 genomes]
rs6474892	0.84[AFR][1000 genomes]
rs6474894	0.90[AFR][1000 genomes]
rs7019779	0.84[AFR][1000 genomes]
rs7019934	0.87[AFR][1000 genomes]
rs7466658	0.84[AFR][1000 genomes]
rs7466688	0.84[AFR][1000 genomes]
rs7469171	0.84[AFR][1000 genomes]
rs7469190	0.84[AFR][1000 genomes]
rs9298721	0.84[AFR][1000 genomes]
rs9298722	0.84[AFR][1000 genomes]
rs9298723	0.84[AFR][1000 genomes]
rs9298724	0.84[AFR][1000 genomes]
rs9987459	0.84[AFR][1000 genomes]
rs9987584	0.84[AFR][1000 genomes]
rs9987587	0.84[AFR][1000 genomes]
rs9987732	0.84[AFR][1000 genomes]
rs9987917	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv892623	chr9:15079847-15127129	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15114600-15121200	Enhancers	Thymus	Thymus
2	chr9:15115000-15124400	Enhancers	Fetal Thymus	thymus
3	chr9:15115200-15118000	Enhancers	Fetal Heart	heart
4	chr9:15116000-15120800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:15116400-15120800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:15116400-15121000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:15116600-15118400	Enhancers	Fetal Muscle Leg	muscle
8	chr9:15116600-15120800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:15116600-15121200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:15116600-15121200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr9:15116600-15121600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:15116800-15120800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr9:15116800-15121200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:15116800-15121200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:15117000-15118000	Enhancers	Fetal Muscle Trunk	muscle
16	chr9:15117000-15121200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr9:15117200-15118000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:15117400-15118000	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr9:15117600-15118000	Weak transcription	Fetal Stomach	stomach

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