Variant report

Variant	rs2761114
Chromosome Location	chr9:15138902-15138903
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15137110..15140066-chr9:15141135..15143979,2	K562	blood:

Variant related genes	Relation type
ENSG00000251960	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10116796	0.81[AFR][1000 genomes]
rs10120028	0.81[AFR][1000 genomes]
rs10121250	0.81[AFR][1000 genomes]
rs10122944	0.81[AFR][1000 genomes]
rs10810345	0.87[AFR][1000 genomes]
rs10810346	0.81[AFR][1000 genomes]
rs1746330	0.97[AFR][1000 genomes]
rs1780152	0.94[AFR][1000 genomes]
rs1780161	0.97[AFR][1000 genomes]
rs1936713	0.81[AFR][1000 genomes]
rs1936714	0.81[AFR][1000 genomes]
rs1936720	0.81[AFR][1000 genomes]
rs1936721	0.81[AFR][1000 genomes]
rs2105414	0.81[AFR][1000 genomes]
rs2105415	0.81[AFR][1000 genomes]
rs2186027	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2382516	0.81[AFR][1000 genomes]
rs2489541	0.87[AFR][1000 genomes]
rs2761092	0.87[AFR][1000 genomes]
rs2761103	0.94[AFR][1000 genomes]
rs2761110	1.00[AFR][1000 genomes]
rs2761111	1.00[AFR][1000 genomes]
rs2761117	0.91[AFR][1000 genomes]
rs2800569	1.00[AFR][1000 genomes]
rs2800592	1.00[YRI][hapmap]
rs2800597	0.87[AFR][1000 genomes]
rs2800614	0.97[AFR][1000 genomes]
rs2800615	0.80[AFR][1000 genomes]
rs2800616	0.97[AFR][1000 genomes]
rs2800619	0.97[AFR][1000 genomes]
rs2800620	0.97[AFR][1000 genomes]
rs4237137	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4275306	0.81[AFR][1000 genomes]
rs4305996	0.91[AFR][1000 genomes]
rs4307425	0.81[AFR][1000 genomes]
rs4373617	0.81[AFR][1000 genomes]
rs4401969	0.81[AFR][1000 genomes]
rs4451417	0.81[AFR][1000 genomes]
rs4517211	0.81[AFR][1000 genomes]
rs4526461	0.81[AFR][1000 genomes]
rs4559332	0.85[AFR][1000 genomes]
rs4579616	0.81[AFR][1000 genomes]
rs4740601	0.81[AFR][1000 genomes]
rs4741457	0.81[AFR][1000 genomes]
rs4741458	0.87[AFR][1000 genomes]
rs4741459	0.81[AFR][1000 genomes]
rs4741461	0.81[AFR][1000 genomes]
rs486612	0.85[YRI][hapmap]
rs613899	0.85[YRI][hapmap]
rs616584	0.85[YRI][hapmap]
rs6474891	0.81[AFR][1000 genomes]
rs6474892	0.81[AFR][1000 genomes]
rs6474894	0.87[AFR][1000 genomes]
rs7019779	0.81[AFR][1000 genomes]
rs7019934	0.84[AFR][1000 genomes]
rs7466658	0.81[AFR][1000 genomes]
rs7466688	0.81[AFR][1000 genomes]
rs7469171	0.81[AFR][1000 genomes]
rs7469190	0.81[AFR][1000 genomes]
rs9298721	0.81[AFR][1000 genomes]
rs9298722	0.81[AFR][1000 genomes]
rs9298723	0.81[AFR][1000 genomes]
rs9298724	0.81[AFR][1000 genomes]
rs9987459	0.81[AFR][1000 genomes]
rs9987584	0.81[AFR][1000 genomes]
rs9987587	0.81[AFR][1000 genomes]
rs9987732	0.81[AFR][1000 genomes]
rs9987917	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15135000-15139600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr9:15135400-15140200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr9:15135400-15146200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:15135600-15142600	Weak transcription	Dnd41	blood
5	chr9:15135600-15144600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:15135800-15139200	Weak transcription	Fetal Stomach	stomach
7	chr9:15135800-15139400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:15135800-15139400	Weak transcription	Osteobl	bone
9	chr9:15135800-15139600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:15135800-15140600	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:15135800-15142600	Weak transcription	Fetal Lung	lung
12	chr9:15135800-15144400	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:15135800-15144800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:15135800-15146000	Weak transcription	Brain Germinal Matrix	brain
15	chr9:15137000-15140200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr9:15137200-15156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:15137400-15147000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:15138400-15139400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:15138400-15139800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr9:15138800-15139000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr9:15138800-15139600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr9:15138800-15146600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr9:15138800-15146800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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