Variant report

Variant	rs2800620
Chromosome Location	chr9:15122887-15122888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10116796	0.84[AFR][1000 genomes]
rs10120028	0.84[AFR][1000 genomes]
rs10121250	0.84[AFR][1000 genomes]
rs10122944	0.84[AFR][1000 genomes]
rs10810345	0.90[AFR][1000 genomes]
rs10810346	0.84[AFR][1000 genomes]
rs1746330	1.00[AFR][1000 genomes]
rs1780152	0.90[AFR][1000 genomes]
rs1780161	1.00[AFR][1000 genomes]
rs1936713	0.84[AFR][1000 genomes]
rs1936714	0.84[AFR][1000 genomes]
rs1936720	0.84[AFR][1000 genomes]
rs1936721	0.84[AFR][1000 genomes]
rs2105414	0.84[AFR][1000 genomes]
rs2105415	0.84[AFR][1000 genomes]
rs2186027	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2382516	0.84[AFR][1000 genomes]
rs2489541	0.84[AFR][1000 genomes]
rs2761092	0.90[AFR][1000 genomes]
rs2761103	0.97[AFR][1000 genomes]
rs2761110	0.97[AFR][1000 genomes]
rs2761111	0.97[AFR][1000 genomes]
rs2761114	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2761117	0.94[AFR][1000 genomes]
rs2800569	0.97[AFR][1000 genomes]
rs2800592	1.00[YRI][hapmap]
rs2800597	0.90[AFR][1000 genomes]
rs2800614	1.00[AFR][1000 genomes]
rs2800615	0.83[AFR][1000 genomes]
rs2800616	1.00[AFR][1000 genomes]
rs2800619	1.00[AFR][1000 genomes]
rs4237137	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs4275306	0.84[AFR][1000 genomes]
rs4305996	0.94[AFR][1000 genomes]
rs4307425	0.84[AFR][1000 genomes]
rs4373617	0.84[AFR][1000 genomes]
rs4401969	0.84[AFR][1000 genomes]
rs4451417	0.84[AFR][1000 genomes]
rs4517211	0.84[AFR][1000 genomes]
rs4526461	0.84[AFR][1000 genomes]
rs4559332	0.88[AFR][1000 genomes]
rs4579616	0.84[AFR][1000 genomes]
rs4740601	0.84[AFR][1000 genomes]
rs4741457	0.84[AFR][1000 genomes]
rs4741458	0.90[AFR][1000 genomes]
rs4741459	0.84[AFR][1000 genomes]
rs4741461	0.84[AFR][1000 genomes]
rs486612	0.87[YRI][hapmap]
rs613899	0.87[YRI][hapmap]
rs616584	0.87[YRI][hapmap]
rs6474891	0.84[AFR][1000 genomes]
rs6474892	0.84[AFR][1000 genomes]
rs6474894	0.90[AFR][1000 genomes]
rs7019779	0.84[AFR][1000 genomes]
rs7019934	0.87[AFR][1000 genomes]
rs7466658	0.84[AFR][1000 genomes]
rs7466688	0.84[AFR][1000 genomes]
rs7469171	0.84[AFR][1000 genomes]
rs7469190	0.84[AFR][1000 genomes]
rs9298721	0.84[AFR][1000 genomes]
rs9298722	0.84[AFR][1000 genomes]
rs9298723	0.84[AFR][1000 genomes]
rs9298724	0.84[AFR][1000 genomes]
rs9987459	0.84[AFR][1000 genomes]
rs9987584	0.84[AFR][1000 genomes]
rs9987587	0.84[AFR][1000 genomes]
rs9987732	0.84[AFR][1000 genomes]
rs9987917	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv892623	chr9:15079847-15127129	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15115000-15124400	Enhancers	Fetal Thymus	thymus
2	chr9:15118000-15126800	Weak transcription	Fetal Heart	heart
3	chr9:15118400-15127000	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:15120000-15123800	Enhancers	Primary T cells from cord blood	blood
5	chr9:15121200-15123200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr9:15122000-15124600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:15122000-15124600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:15122000-15124600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:15122000-15124600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:15122000-15124600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:15122000-15125000	Enhancers	Thymus	Thymus
12	chr9:15122200-15124400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:15122400-15123600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr9:15122400-15124600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:15122600-15123000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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