Variant report

Variant	rs2808382
Chromosome Location	chr1:212091948-212091949
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:212090529..212093204-chr1:212208450..212210624,2	K562	blood:
2	chr1:212089622..212092139-chr1:212102871..212105783,2	K562	blood:
3	chr1:212085059..212088251-chr1:212089399..212094888,5	K562	blood:
4	chr1:212088917..212091243-chr1:212091462..212093769,2	K562	blood:

Variant related genes	Relation type
ENSG00000143476	Chromatin interaction
ENSG00000143493	Chromatin interaction

rs_ID	r²[population]
rs10863938	0.81[GIH][hapmap]
rs11119810	1.00[YRI][hapmap]
rs12138283	1.00[YRI][hapmap]
rs2788121	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788130	0.81[GIH][hapmap]
rs2788135	0.81[GIH][hapmap]
rs2788137	0.81[GIH][hapmap]
rs2788141	0.81[GIH][hapmap]
rs2808380	0.81[GIH][hapmap]
rs2970586	0.81[GIH][hapmap]
rs2993540	0.81[GIH][hapmap]
rs2993546	0.81[GIH][hapmap]
rs3009986	0.81[GIH][hapmap]
rs3009994	0.81[GIH][hapmap]
rs3010008	0.81[GIH][hapmap]
rs3010022	0.81[GIH][hapmap]
rs7524009	1.00[YRI][hapmap]

Disease	PMID	Source
Clozapine-induced agranulocytosis	25187353	GWAS catalog

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212082800-212093400	Weak transcription	Right Atrium	heart
2	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
3	chr1:212085400-212101800	Weak transcription	Colonic Mucosa	Colon
4	chr1:212088000-212099200	Enhancers	Fetal Intestine Large	intestine
5	chr1:212088600-212099200	Enhancers	Fetal Intestine Small	intestine
6	chr1:212089800-212093600	Enhancers	HepG2	liver
7	chr1:212089800-212093800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:212090000-212093600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:212090200-212094600	Enhancers	Hela-S3	cervix
10	chr1:212090400-212092000	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr1:212090400-212092000	Flanking Active TSS	A549	lung
12	chr1:212090400-212094600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:212090600-212092000	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr1:212090600-212092200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:212090600-212093200	Enhancers	Liver	Liver
16	chr1:212090600-212093800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr1:212090600-212094400	Enhancers	Osteobl	bone
18	chr1:212090600-212094600	Enhancers	Duodenum Mucosa	Duodenum
19	chr1:212090600-212094800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr1:212090800-212092000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr1:212090800-212092200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:212090800-212092200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:212090800-212092200	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr1:212090800-212092600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:212090800-212093800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:212090800-212094400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr1:212090800-212094400	Enhancers	Pancreas	Pancrea
28	chr1:212090800-212094400	Enhancers	Stomach Mucosa	stomach
29	chr1:212090800-212094400	Enhancers	NHLF	lung
30	chr1:212090800-212094600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr1:212090800-212095400	Enhancers	Adipose Nuclei	Adipose
32	chr1:212091000-212092000	Enhancers	HUVEC	blood vessel
33	chr1:212091000-212092200	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr1:212091000-212092800	Enhancers	NH-A	brain
35	chr1:212091000-212094600	Enhancers	NHDF-Ad	bronchial
36	chr1:212091000-212102200	Weak transcription	Esophagus	oesophagus
37	chr1:212091200-212092000	Enhancers	HSMMtube	muscle
38	chr1:212091600-212092000	Enhancers	HMEC	breast
39	chr1:212091600-212092000	Enhancers	HSMM	muscle
40	chr1:212091600-212092200	Enhancers	Small Intestine	intestine
41	chr1:212091600-212093600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr1:212091800-212092000	Enhancers	Primary monocytes fromperipheralblood	blood

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