Variant report

Variant	rs3009994
Chromosome Location	chr1:212174125-212174126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212174121..212175878-chr1:212185510..212187891,2	K562	blood:
2	chr1:212163509..212166419-chr1:212171986..212174897,2	K562	blood:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs1017979	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs10863933	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10863934	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10863938	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10863940	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1586660	0.90[GIH][hapmap];0.90[TSI][hapmap]
rs2000168	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs2105322	1.00[CEU][hapmap]
rs2788128	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2788129	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2788130	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2788131	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2788134	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2788135	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2788136	1.00[CEU][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2788137	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2788141	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs2788142	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2788144	0.86[EUR][1000 genomes]
rs2788146	0.86[EUR][1000 genomes]
rs2808376	0.86[EUR][1000 genomes]
rs2808377	0.86[EUR][1000 genomes]
rs2808380	1.00[GIH][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2808382	0.81[GIH][hapmap]
rs2808383	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2808384	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2808387	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2808388	0.90[GIH][hapmap];0.90[TSI][hapmap]
rs2808390	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2970573	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2970574	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2970575	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2970576	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2970581	0.86[EUR][1000 genomes]
rs2970585	1.00[CEU][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2970586	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2970588	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2970590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2970591	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2970594	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2970596	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2970597	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2970598	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2970600	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2970602	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993524	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2993525	1.00[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2993526	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2993527	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2993530	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993532	1.00[EUR][1000 genomes]
rs2993535	0.90[GIH][hapmap];0.90[TSI][hapmap]
rs2993536	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[GIH][hapmap];0.90[TSI][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993537	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993540	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2993542	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2993543	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2993546	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2993548	1.00[AMR][1000 genomes]
rs2993549	1.00[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3009983	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3009986	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3009990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3009992	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3009993	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3009995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3009996	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3009998	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3009999	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010000	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010001	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010005	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs3010008	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3010014	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010015	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010017	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010018	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010019	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010020	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010021	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010022	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010029	0.90[TSI][hapmap]
rs4397712	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs4951430	1.00[CEU][hapmap]
rs4951437	1.00[CEU][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4951565	1.00[AMR][1000 genomes]
rs6540717	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6540718	1.00[AMR][1000 genomes]
rs6656826	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6658972	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6660399	1.00[AMR][1000 genomes]
rs6672030	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6683980	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6704044	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7517565	1.00[CEU][hapmap]
rs7532954	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7545292	0.90[GIH][hapmap];0.90[TSI][hapmap]
rs7551276	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212112800-212202000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr1:212114200-212185800	Weak transcription	Brain Angular Gyrus	brain
3	chr1:212123800-212198200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:212129400-212204000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:212133400-212188200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:212133600-212174400	Weak transcription	Spleen	Spleen
7	chr1:212133800-212208000	Weak transcription	Gastric	stomach
8	chr1:212134000-212207600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr1:212134000-212207800	Weak transcription	Colonic Mucosa	Colon
10	chr1:212136600-212204000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:212146000-212185600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr1:212148800-212207600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr1:212149200-212180600	Weak transcription	HSMMtube	muscle
14	chr1:212149200-212199800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:212151800-212187000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr1:212152800-212201600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:212153400-212203600	Weak transcription	Psoas Muscle	Psoas
18	chr1:212153600-212202600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr1:212157000-212180000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:212157600-212183000	Weak transcription	HUVEC	blood vessel
21	chr1:212159600-212178200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr1:212160000-212189400	Weak transcription	NHDF-Ad	bronchial
23	chr1:212160200-212178200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr1:212160200-212182200	Weak transcription	NHEK	skin
25	chr1:212160200-212182800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr1:212160200-212199800	Weak transcription	Brain Substantia Nigra	brain
27	chr1:212160200-212202600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr1:212160400-212179400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr1:212160400-212179800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr1:212160400-212182600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:212160400-212182800	Weak transcription	Brain Hippocampus Middle	brain
32	chr1:212160600-212174200	Weak transcription	Adipose Nuclei	Adipose
33	chr1:212160800-212178200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr1:212161200-212180000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr1:212161200-212180600	Weak transcription	HepG2	liver
36	chr1:212161200-212189200	Weak transcription	NH-A	brain
37	chr1:212161400-212174200	Weak transcription	Primary B cells from cord blood	blood
38	chr1:212161400-212174200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr1:212161400-212174800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:212161400-212178200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr1:212161400-212178200	Weak transcription	HSMM	muscle
42	chr1:212161600-212175800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr1:212161800-212178200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr1:212161800-212181000	Weak transcription	NHLF	lung
45	chr1:212161800-212182200	Weak transcription	Colon Smooth Muscle	Colon
46	chr1:212168400-212174800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr1:212168400-212178000	Strong transcription	Hela-S3	cervix
48	chr1:212168800-212185200	Strong transcription	Fetal Thymus	thymus
49	chr1:212169000-212175200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr1:212170000-212184600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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