Variant report

Variant	rs2788146
Chromosome Location	chr1:212070975-212070976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10863927	0.91[EUR][1000 genomes]
rs11119818	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11119819	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1418047	0.86[EUR][1000 genomes]
rs1539196	0.86[EUR][1000 genomes]
rs2000168	0.91[EUR][1000 genomes]
rs2050953	0.86[EUR][1000 genomes]
rs2105322	0.91[EUR][1000 genomes]
rs2788128	0.91[EUR][1000 genomes]
rs2788129	0.91[EUR][1000 genomes]
rs2788130	0.91[EUR][1000 genomes]
rs2788131	0.91[EUR][1000 genomes]
rs2788134	0.86[EUR][1000 genomes]
rs2788135	0.91[EUR][1000 genomes]
rs2788136	0.91[EUR][1000 genomes]
rs2788137	0.91[EUR][1000 genomes]
rs2788141	1.00[EUR][1000 genomes]
rs2788142	1.00[EUR][1000 genomes]
rs2788144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2808376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2808377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2808380	0.91[EUR][1000 genomes]
rs2808383	1.00[EUR][1000 genomes]
rs2808384	0.91[EUR][1000 genomes]
rs2808387	0.91[EUR][1000 genomes]
rs2808390	0.91[EUR][1000 genomes]
rs28475044	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28851183	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2970573	0.91[EUR][1000 genomes]
rs2970574	0.91[EUR][1000 genomes]
rs2970575	0.91[EUR][1000 genomes]
rs2970576	1.00[EUR][1000 genomes]
rs2970581	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2970585	0.86[EUR][1000 genomes]
rs2970600	0.86[EUR][1000 genomes]
rs2970602	0.86[EUR][1000 genomes]
rs2993530	0.86[EUR][1000 genomes]
rs2993532	0.86[EUR][1000 genomes]
rs2993536	0.86[EUR][1000 genomes]
rs2993537	0.86[EUR][1000 genomes]
rs2993540	0.91[EUR][1000 genomes]
rs2993542	0.91[EUR][1000 genomes]
rs2993543	1.00[EUR][1000 genomes]
rs3009986	0.86[EUR][1000 genomes]
rs3009990	0.86[EUR][1000 genomes]
rs3009992	0.86[EUR][1000 genomes]
rs3009993	0.86[EUR][1000 genomes]
rs3009994	0.86[EUR][1000 genomes]
rs3009995	0.86[EUR][1000 genomes]
rs3009996	0.86[EUR][1000 genomes]
rs3009998	0.86[EUR][1000 genomes]
rs3009999	0.86[EUR][1000 genomes]
rs3010000	0.86[EUR][1000 genomes]
rs3010001	0.86[EUR][1000 genomes]
rs3010005	0.86[EUR][1000 genomes]
rs3010008	0.91[EUR][1000 genomes]
rs4245744	0.83[EUR][1000 genomes]
rs4508084	0.91[EUR][1000 genomes]
rs4579825	0.91[EUR][1000 genomes]
rs4951424	0.86[EUR][1000 genomes]
rs4951427	0.86[EUR][1000 genomes]
rs4951429	0.91[EUR][1000 genomes]
rs4951430	0.91[EUR][1000 genomes]
rs4951432	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4951547	0.86[EUR][1000 genomes]
rs4951549	0.86[EUR][1000 genomes]
rs60146950	0.86[EUR][1000 genomes]
rs6540710	0.91[EUR][1000 genomes]
rs6664386	0.81[EUR][1000 genomes]
rs6669803	0.86[EUR][1000 genomes]
rs6672393	0.86[EUR][1000 genomes]
rs6685282	0.91[EUR][1000 genomes]
rs6689342	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6693275	0.86[EUR][1000 genomes]
rs6697341	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6699292	0.86[EUR][1000 genomes]
rs6699981	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7413558	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7517565	0.91[EUR][1000 genomes]
rs7545377	0.91[EUR][1000 genomes]
rs7553567	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212063200-212074600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:212069200-212071400	Enhancers	HepG2	liver
3	chr1:212069200-212075200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:212069400-212073800	Weak transcription	Fetal Intestine Large	intestine
5	chr1:212069600-212073800	Weak transcription	Fetal Intestine Small	intestine
6	chr1:212070000-212071000	Enhancers	Fetal Muscle Leg	muscle
7	chr1:212070200-212071000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:212070800-212071000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:212070800-212071000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr1:212070800-212071200	Enhancers	A549	lung

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