The 2.0 version of rSNPBase

Variant report

Variant rs3009990
Chromosome Location chr1:212185816-212185817
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212112800-212202000 Weak transcription Primary T killer naive cells fromperipheralblood blood
2 chr1:212123800-212198200 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr1:212129400-212204000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
4 chr1:212133400-212188200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr1:212133800-212208000 Weak transcription Gastric stomach
6 chr1:212134000-212207600 Weak transcription Primary T helper naive cells fromperipheralblood blood
7 chr1:212134000-212207800 Weak transcription Colonic Mucosa Colon
8 chr1:212136600-212204000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
9 chr1:212148800-212207600 Weak transcription Rectal Smooth Muscle rectum
10 chr1:212149200-212199800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr1:212151800-212187000 Weak transcription Primary neutrophils fromperipheralblood blood
12 chr1:212152800-212201600 Weak transcription Placenta Amnion Placenta Amnion
13 chr1:212153400-212203600 Weak transcription Psoas Muscle Psoas
14 chr1:212153600-212202600 Weak transcription H9 Cell Line embryonic stem cell
15 chr1:212160000-212189400 Weak transcription NHDF-Ad bronchial
16 chr1:212160200-212199800 Weak transcription Brain Substantia Nigra brain
17 chr1:212160200-212202600 Weak transcription Muscle Satellite Cultured Cells --
18 chr1:212161200-212189200 Weak transcription NH-A brain
19 chr1:212170200-212191400 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr1:212170200-212197600 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr1:212170400-212202600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr1:212170600-212194200 Weak transcription Placenta Placenta
23 chr1:212170800-212199200 Weak transcription Pancreas Pancrea
24 chr1:212170800-212207800 Weak transcription Right Ventricle heart
25 chr1:212171000-212188200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
26 chr1:212171000-212189400 Weak transcription Brain Anterior Caudate brain
27 chr1:212171000-212199800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
28 chr1:212171200-212189800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr1:212171200-212197800 Weak transcription Brain Cingulate Gyrus brain
30 chr1:212171200-212208000 Weak transcription Esophagus oesophagus
31 chr1:212171200-212208000 Weak transcription Lung lung
32 chr1:212171400-212197800 Weak transcription Aorta Aorta
33 chr1:212171600-212189400 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr1:212171600-212198000 Weak transcription Fetal Kidney kidney
35 chr1:212171600-212198200 Weak transcription Small Intestine intestine
36 chr1:212171600-212207400 Weak transcription Fetal Stomach stomach
37 chr1:212171800-212188000 Weak transcription Fetal Intestine Small intestine
38 chr1:212171800-212191400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr1:212171800-212197600 Weak transcription Pancreatic Islets Pancreatic Islet
40 chr1:212171800-212207600 Weak transcription Stomach Smooth Muscle stomach
41 chr1:212172200-212199800 Weak transcription Stomach Mucosa stomach
42 chr1:212173000-212204200 Weak transcription Fetal Heart heart
43 chr1:212176600-212189200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
44 chr1:212180400-212206800 Weak transcription Duodenum Smooth Muscle Duodenum
45 chr1:212180600-212190600 Weak transcription Primary T regulatory cells fromperipheralblood blood
46 chr1:212180800-212189200 Weak transcription HUES48 Cell Line embryonic stem cell
47 chr1:212180800-212189600 Weak transcription Primary T helper cells fromperipheralblood blood
48 chr1:212180800-212204000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr1:212181000-212188200 Weak transcription H1 Cell Line embryonic stem cell
50 chr1:212181000-212189400 Weak transcription Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015