Variant report

Variant	rs2808383
Chromosome Location	chr1:212091366-212091367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:212090529..212093204-chr1:212208450..212210624,2	K562	blood:
2	chr1:212089622..212092139-chr1:212102871..212105783,2	K562	blood:
3	chr1:212085059..212088251-chr1:212089399..212094888,5	K562	blood:

Variant related genes	Relation type
ENSG00000143476	Chromatin interaction
ENSG00000143493	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1017979	1.00[CEU][hapmap]
rs10863927	0.91[EUR][1000 genomes]
rs10863938	1.00[CEU][hapmap]
rs11119809	1.00[AMR][1000 genomes]
rs11119818	0.91[EUR][1000 genomes]
rs11119819	0.91[EUR][1000 genomes]
rs1418047	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1539196	0.86[EUR][1000 genomes]
rs2000168	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2050953	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs2105322	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2788128	0.91[EUR][1000 genomes]
rs2788129	0.91[EUR][1000 genomes]
rs2788130	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2788131	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2788134	0.86[EUR][1000 genomes]
rs2788135	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2788136	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2788137	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2788141	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788142	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788144	1.00[EUR][1000 genomes]
rs2788146	1.00[EUR][1000 genomes]
rs2808376	1.00[EUR][1000 genomes]
rs2808377	1.00[EUR][1000 genomes]
rs2808380	0.91[EUR][1000 genomes]
rs2808384	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2808387	0.91[EUR][1000 genomes]
rs2808390	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs28475044	0.91[EUR][1000 genomes]
rs28851183	0.91[EUR][1000 genomes]
rs2970573	0.91[EUR][1000 genomes]
rs2970574	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2970575	0.91[EUR][1000 genomes]
rs2970576	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2970581	1.00[EUR][1000 genomes]
rs2970585	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2970586	1.00[CEU][hapmap]
rs2970600	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2970602	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2993524	1.00[CEU][hapmap]
rs2993525	1.00[CEU][hapmap]
rs2993527	1.00[CEU][hapmap]
rs2993530	0.86[EUR][1000 genomes]
rs2993532	0.86[EUR][1000 genomes]
rs2993536	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2993537	0.86[EUR][1000 genomes]
rs2993540	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2993542	0.91[EUR][1000 genomes]
rs2993543	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993546	1.00[CEU][hapmap]
rs2993549	1.00[CEU][hapmap]
rs3009986	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3009990	0.86[EUR][1000 genomes]
rs3009992	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3009993	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3009994	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3009995	0.86[EUR][1000 genomes]
rs3009996	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3009998	0.86[EUR][1000 genomes]
rs3009999	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3010000	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3010001	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3010005	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3010008	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs3010014	1.00[CEU][hapmap]
rs3010015	1.00[CEU][hapmap]
rs3010017	1.00[CEU][hapmap]
rs3010018	1.00[CEU][hapmap]
rs3010022	1.00[CEU][hapmap]
rs4245744	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4397712	1.00[CEU][hapmap]
rs4508084	0.91[EUR][1000 genomes]
rs4579825	0.91[EUR][1000 genomes]
rs4951424	0.86[EUR][1000 genomes]
rs4951427	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4951429	0.91[EUR][1000 genomes]
rs4951430	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4951432	0.91[EUR][1000 genomes]
rs4951437	1.00[CEU][hapmap]
rs4951547	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4951549	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4951551	1.00[AMR][1000 genomes]
rs60146950	0.86[EUR][1000 genomes]
rs6540707	1.00[AMR][1000 genomes]
rs6540710	0.91[EUR][1000 genomes]
rs6656780	1.00[AMR][1000 genomes]
rs6656826	1.00[CEU][hapmap]
rs6658972	1.00[CEU][hapmap]
rs6664386	0.81[EUR][1000 genomes]
rs6669803	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6672030	1.00[CEU][hapmap]
rs6672393	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6685282	0.91[EUR][1000 genomes]
rs6689342	0.91[EUR][1000 genomes]
rs6693275	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6697341	0.91[EUR][1000 genomes]
rs6699292	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6699981	0.91[EUR][1000 genomes]
rs7413558	0.91[EUR][1000 genomes]
rs7517565	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7545377	0.91[EUR][1000 genomes]
rs7553567	0.84[EUR][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212082800-212093400	Weak transcription	Right Atrium	heart
2	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
3	chr1:212085400-212101800	Weak transcription	Colonic Mucosa	Colon
4	chr1:212088000-212099200	Enhancers	Fetal Intestine Large	intestine
5	chr1:212088600-212099200	Enhancers	Fetal Intestine Small	intestine
6	chr1:212089800-212093600	Enhancers	HepG2	liver
7	chr1:212089800-212093800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:212090000-212091800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr1:212090000-212093600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr1:212090200-212094600	Enhancers	Hela-S3	cervix
11	chr1:212090400-212092000	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr1:212090400-212092000	Flanking Active TSS	A549	lung
13	chr1:212090400-212094600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:212090600-212092000	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr1:212090600-212092200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:212090600-212093200	Enhancers	Liver	Liver
17	chr1:212090600-212093800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr1:212090600-212094400	Enhancers	Osteobl	bone
19	chr1:212090600-212094600	Enhancers	Duodenum Mucosa	Duodenum
20	chr1:212090600-212094800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr1:212090800-212092000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr1:212090800-212092200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:212090800-212092200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:212090800-212092200	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr1:212090800-212092600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:212090800-212093800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:212090800-212094400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr1:212090800-212094400	Enhancers	Pancreas	Pancrea
29	chr1:212090800-212094400	Enhancers	Stomach Mucosa	stomach
30	chr1:212090800-212094400	Enhancers	NHLF	lung
31	chr1:212090800-212094600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:212090800-212095400	Enhancers	Adipose Nuclei	Adipose
33	chr1:212091000-212091600	Weak transcription	Small Intestine	intestine
34	chr1:212091000-212092000	Enhancers	HUVEC	blood vessel
35	chr1:212091000-212092200	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr1:212091000-212092800	Enhancers	NH-A	brain
37	chr1:212091000-212094600	Enhancers	NHDF-Ad	bronchial
38	chr1:212091000-212102200	Weak transcription	Esophagus	oesophagus
39	chr1:212091200-212091400	Enhancers	Stomach Smooth Muscle	stomach
40	chr1:212091200-212092000	Enhancers	HSMMtube	muscle

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