Variant report

Variant	rs2993524
Chromosome Location	chr1:212200565-212200566
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212185809..212187701-chr1:212199542..212202188,2	MCF-7	breast:
2	chr1:212198918..212201140-chr1:212204787..212206664,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1017979	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs10863933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10863934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10863938	1.00[CEU][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10863940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1586660	0.88[TSI][hapmap]
rs2788128	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2788129	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2788130	1.00[CEU][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2788131	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs2788134	1.00[AMR][1000 genomes]
rs2788135	1.00[CEU][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2788136	1.00[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2788137	1.00[CEU][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2788141	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs2788142	1.00[CEU][hapmap]
rs2808380	0.88[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2808383	1.00[CEU][hapmap]
rs2808384	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2808387	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2808388	0.88[TSI][hapmap]
rs2808390	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2970573	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2970574	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2970575	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2970576	1.00[CEU][hapmap]
rs2970585	1.00[CEU][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2970586	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2970588	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2970590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2970591	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2970594	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2970596	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2970597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2970598	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2970600	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2970602	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2993525	1.00[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993526	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993527	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993530	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2993532	0.82[EUR][1000 genomes]
rs2993535	0.88[TSI][hapmap]
rs2993536	1.00[CEU][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2993537	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2993540	1.00[CEU][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2993542	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2993543	1.00[CEU][hapmap]
rs2993546	1.00[CEU][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993548	1.00[AMR][1000 genomes]
rs2993549	1.00[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3009983	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3009986	1.00[CEU][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3009990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3009992	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3009993	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3009994	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3009995	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3009996	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3009998	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3009999	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010000	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010001	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010005	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes]
rs3010008	1.00[CEU][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3010014	1.00[CEU][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010015	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010017	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010018	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010019	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010022	1.00[CEU][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010029	0.88[TSI][hapmap]
rs4309042	0.82[EUR][1000 genomes]
rs4397712	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs4951437	1.00[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4951565	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6540717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6540718	1.00[AMR][1000 genomes]
rs6656826	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6658972	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6660399	1.00[AMR][1000 genomes]
rs6672030	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6683980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6704044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7532954	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7545292	0.88[TSI][hapmap]
rs7551276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212112800-212202000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr1:212129400-212204000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:212133800-212208000	Weak transcription	Gastric	stomach
4	chr1:212134000-212207600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr1:212134000-212207800	Weak transcription	Colonic Mucosa	Colon
6	chr1:212136600-212204000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:212148800-212207600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr1:212152800-212201600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr1:212153400-212203600	Weak transcription	Psoas Muscle	Psoas
10	chr1:212153600-212202600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:212160200-212202600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:212170400-212202600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:212170800-212207800	Weak transcription	Right Ventricle	heart
14	chr1:212171200-212208000	Weak transcription	Esophagus	oesophagus
15	chr1:212171200-212208000	Weak transcription	Lung	lung
16	chr1:212171600-212207400	Weak transcription	Fetal Stomach	stomach
17	chr1:212171800-212207600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr1:212173000-212204200	Weak transcription	Fetal Heart	heart
19	chr1:212180400-212206800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr1:212180800-212204000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:212182200-212205000	Weak transcription	Thymus	Thymus
22	chr1:212183200-212202600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:212188400-212202400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr1:212188400-212202400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr1:212188400-212204800	Weak transcription	Fetal Intestine Small	intestine
26	chr1:212188600-212203800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr1:212188600-212204200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr1:212188600-212206800	Weak transcription	Fetal Intestine Large	intestine
29	chr1:212190000-212202600	Weak transcription	NH-A	brain
30	chr1:212190200-212203800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr1:212190200-212203800	Weak transcription	NHDF-Ad	bronchial
32	chr1:212190200-212207800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr1:212190400-212200600	Weak transcription	Osteobl	bone
34	chr1:212190400-212202600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr1:212190400-212204200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr1:212190400-212204600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr1:212190400-212207800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr1:212191000-212204000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr1:212192200-212208000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr1:212194000-212201200	Weak transcription	Fetal Brain Male	brain
41	chr1:212194000-212204000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr1:212194200-212207800	Weak transcription	Left Ventricle	heart
43	chr1:212194400-212207000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr1:212194400-212207600	Weak transcription	Fetal Thymus	thymus
45	chr1:212198200-212204800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr1:212198400-212200600	Weak transcription	NHEK	skin
47	chr1:212198400-212201800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr1:212198400-212202200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr1:212198400-212202400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr1:212198400-212202400	Weak transcription	Primary T cells from cord blood	blood

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