The 2.0 version of rSNPBase

Variant report

Variant rs6540718
Chromosome Location chr1:212274413-212274414
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212214400-212278000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:212241600-212284600 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr1:212254800-212278000 Weak transcription NHDF-Ad bronchial
4 chr1:212256400-212278600 Weak transcription NHLF lung
5 chr1:212262000-212276800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr1:212262000-212283000 Weak transcription NH-A brain
7 chr1:212262000-212284400 Weak transcription Osteobl bone
8 chr1:212262200-212279600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr1:212262200-212289200 Weak transcription Muscle Satellite Cultured Cells --
10 chr1:212263000-212275200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr1:212263400-212278200 Weak transcription Duodenum Mucosa Duodenum
12 chr1:212264400-212282400 Weak transcription Primary monocytes fromperipheralblood blood
13 chr1:212267200-212287000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr1:212268600-212282800 Weak transcription Primary neutrophils fromperipheralblood blood
15 chr1:212269800-212279600 Strong transcription Dnd41 blood
16 chr1:212270200-212278800 Weak transcription Primary T cells from cord blood blood
17 chr1:212270400-212280400 Strong transcription Primary hematopoietic stem cells short term culture blood
18 chr1:212270600-212276800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr1:212270600-212280200 Weak transcription Primary hematopoietic stem cells blood
20 chr1:212270800-212279800 Strong transcription Fetal Thymus thymus
21 chr1:212271000-212275400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr1:212271200-212274600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr1:212271400-212280000 Strong transcription GM12878-XiMat blood
24 chr1:212271600-212280400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr1:212271600-212287000 Weak transcription Primary B cells from cord blood blood
26 chr1:212271800-212275400 Strong transcription Cortex derived primary cultured neurospheres brain
27 chr1:212271800-212277400 Strong transcription iPS-20b Cell Line embryonic stem cell
28 chr1:212271800-212277600 Strong transcription Hela-S3 cervix
29 chr1:212271800-212278600 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr1:212271800-212280200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr1:212272000-212281000 Weak transcription Esophagus oesophagus
32 chr1:212272000-212285400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr1:212272000-212285800 Weak transcription Lung lung
34 chr1:212272000-212291000 Weak transcription Left Ventricle heart
35 chr1:212272200-212274800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr1:212272200-212276400 Weak transcription Spleen Spleen
37 chr1:212272200-212277200 Strong transcription HUES64 Cell Line embryonic stem cell
38 chr1:212272200-212277600 Strong transcription HUES6 Cell Line embryonic stem cell
39 chr1:212272200-212278200 Weak transcription iPS-15b Cell Line embryonic stem cell
40 chr1:212272200-212279600 Weak transcription H9 Cell Line embryonic stem cell
41 chr1:212272200-212280200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
42 chr1:212272200-212280200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
43 chr1:212272200-212282800 Weak transcription Placenta Placenta
44 chr1:212272400-212274600 Strong transcription Fetal Stomach stomach
45 chr1:212272400-212275600 Strong transcription K562 blood
46 chr1:212272400-212277800 Weak transcription Adipose Nuclei Adipose
47 chr1:212272400-212278000 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr1:212272600-212277000 Weak transcription Fetal Intestine Large intestine
49 chr1:212272600-212277800 Weak transcription Small Intestine intestine
50 chr1:212272600-212281600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015