Variant report

Variant	rs2970575
Chromosome Location	chr1:212109621-212109622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTL-6	chr1:212109591-212109976	NONHSAT009338

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs1017979	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs10863927	0.82[EUR][1000 genomes]
rs10863933	1.00[AMR][1000 genomes]
rs10863934	1.00[AMR][1000 genomes]
rs10863938	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs10863940	1.00[AMR][1000 genomes]
rs11119818	0.82[EUR][1000 genomes]
rs11119819	0.82[EUR][1000 genomes]
rs1418047	1.00[CEU][hapmap]
rs2000168	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2050953	0.82[CEU][hapmap]
rs2105322	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2788128	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788129	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788130	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788131	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788134	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2788135	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2788136	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788137	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788141	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2788142	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2788144	0.91[EUR][1000 genomes]
rs2788146	0.91[EUR][1000 genomes]
rs2808376	0.91[EUR][1000 genomes]
rs2808377	0.91[EUR][1000 genomes]
rs2808380	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs2808383	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2808384	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2808387	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2808390	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28475044	0.82[EUR][1000 genomes]
rs28851183	0.82[EUR][1000 genomes]
rs2970573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2970574	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2970576	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2970581	0.91[EUR][1000 genomes]
rs2970585	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2970586	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs2970588	1.00[AMR][1000 genomes]
rs2970590	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2970591	1.00[AMR][1000 genomes]
rs2970594	1.00[AMR][1000 genomes]
rs2970597	1.00[AMR][1000 genomes]
rs2970598	1.00[AMR][1000 genomes]
rs2970600	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2970602	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2993524	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2993525	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs2993526	1.00[AMR][1000 genomes]
rs2993527	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2993530	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2993532	0.94[EUR][1000 genomes]
rs2993536	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2993537	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2993540	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993543	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2993546	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs2993548	1.00[AMR][1000 genomes]
rs2993549	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs3009983	1.00[AMR][1000 genomes]
rs3009986	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3009990	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3009992	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3009993	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3009994	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3009995	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3009996	1.00[CEU][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3009998	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3009999	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3010000	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3010001	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3010005	1.00[CEU][hapmap];0.92[YRI][hapmap];0.94[EUR][1000 genomes]
rs3010008	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010014	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs3010015	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs3010017	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3010018	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs3010019	1.00[AMR][1000 genomes]
rs3010020	1.00[AMR][1000 genomes]
rs3010021	1.00[AMR][1000 genomes]
rs3010022	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs4245744	1.00[CEU][hapmap]
rs4397712	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs4508084	0.82[EUR][1000 genomes]
rs4579825	0.82[EUR][1000 genomes]
rs4951427	1.00[CEU][hapmap]
rs4951429	0.82[EUR][1000 genomes]
rs4951430	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4951432	0.82[EUR][1000 genomes]
rs4951437	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs4951547	1.00[CEU][hapmap]
rs4951549	1.00[CEU][hapmap]
rs4951565	1.00[AMR][1000 genomes]
rs6540710	0.82[EUR][1000 genomes]
rs6540717	1.00[AMR][1000 genomes]
rs6540718	1.00[AMR][1000 genomes]
rs6656826	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs6658972	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6660399	1.00[AMR][1000 genomes]
rs6669803	1.00[CEU][hapmap]
rs6672030	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs6672393	1.00[CEU][hapmap]
rs6683980	1.00[AMR][1000 genomes]
rs6685282	0.82[EUR][1000 genomes]
rs6689342	0.82[EUR][1000 genomes]
rs6693275	1.00[CEU][hapmap]
rs6697341	0.82[EUR][1000 genomes]
rs6699292	1.00[CEU][hapmap]
rs6699981	0.82[EUR][1000 genomes]
rs6704044	1.00[AMR][1000 genomes]
rs7413558	0.82[EUR][1000 genomes]
rs7517565	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7532954	1.00[AMR][1000 genomes]
rs7545377	0.82[EUR][1000 genomes]
rs7551276	1.00[AMR][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:212102400-212113200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:212102600-212115200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:212102600-212120400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:212102800-212111400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:212102800-212114400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:212102800-212115000	Weak transcription	Fetal Thymus	thymus
8	chr1:212102800-212115200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:212103000-212132600	Weak transcription	Gastric	stomach
10	chr1:212103200-212115000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr1:212103200-212115000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:212103200-212115200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:212103200-212115200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr1:212103400-212111600	Weak transcription	Liver	Liver
15	chr1:212103400-212113200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:212103400-212113200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:212103600-212111800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr1:212103600-212111800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr1:212103600-212115000	Weak transcription	NHEK	skin
20	chr1:212103600-212115400	Weak transcription	HMEC	breast
21	chr1:212103600-212132200	Weak transcription	Esophagus	oesophagus
22	chr1:212103800-212132200	Weak transcription	NHLF	lung
23	chr1:212104000-212117600	Weak transcription	HepG2	liver
24	chr1:212104200-212115000	Weak transcription	Lung	lung
25	chr1:212104800-212114800	Weak transcription	Hela-S3	cervix
26	chr1:212104800-212124400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:212106200-212111800	Weak transcription	Primary B cells from cord blood	blood
28	chr1:212106200-212148600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr1:212106400-212111800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:212106400-212111800	Weak transcription	Left Ventricle	heart
31	chr1:212106400-212115000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:212106400-212132400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:212106400-212132600	Weak transcription	Right Ventricle	heart
34	chr1:212106400-212147800	Weak transcription	NH-A	brain
35	chr1:212106800-212111800	Weak transcription	Adipose Nuclei	Adipose
36	chr1:212106800-212112200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr1:212106800-212113400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr1:212107000-212110200	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr1:212107000-212111800	Weak transcription	K562	blood
40	chr1:212107000-212115000	Weak transcription	Placenta	Placenta
41	chr1:212107000-212115200	Weak transcription	HSMM	muscle
42	chr1:212107000-212118000	Weak transcription	HSMMtube	muscle
43	chr1:212107000-212132800	Weak transcription	Pancreas	Pancrea
44	chr1:212107200-212116600	Weak transcription	HUVEC	blood vessel
45	chr1:212107400-212115000	Weak transcription	Fetal Brain Female	brain
46	chr1:212108000-212111800	Weak transcription	Right Atrium	heart
47	chr1:212108000-212115000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr1:212108000-212132400	Weak transcription	Spleen	Spleen
49	chr1:212108200-212115000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr1:212108400-212115200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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