Variant report

Variant	rs3010005
Chromosome Location	chr1:212150730-212150731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212138155..212139723-chr1:212150247..212153118,2	K562	blood:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1017979	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10863933	0.82[EUR][1000 genomes]
rs10863934	0.82[EUR][1000 genomes]
rs10863938	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs10863940	0.82[EUR][1000 genomes]
rs1418047	1.00[CEU][hapmap]
rs2000168	1.00[CEU][hapmap]
rs2105322	1.00[CEU][hapmap]
rs2788128	0.94[EUR][1000 genomes]
rs2788129	0.94[EUR][1000 genomes]
rs2788130	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs2788131	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2788134	0.88[EUR][1000 genomes]
rs2788135	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs2788136	1.00[CEU][hapmap];0.84[YRI][hapmap];0.94[EUR][1000 genomes]
rs2788137	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs2788141	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2788142	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2788144	0.86[EUR][1000 genomes]
rs2788146	0.86[EUR][1000 genomes]
rs2808376	0.86[EUR][1000 genomes]
rs2808377	0.86[EUR][1000 genomes]
rs2808380	0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs2808383	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2808384	1.00[CEU][hapmap];0.92[YRI][hapmap];0.94[EUR][1000 genomes]
rs2808387	0.94[EUR][1000 genomes]
rs2808390	1.00[CEU][hapmap];0.92[YRI][hapmap];0.94[EUR][1000 genomes]
rs2970573	0.94[EUR][1000 genomes]
rs2970574	1.00[CEU][hapmap];0.92[YRI][hapmap];0.94[EUR][1000 genomes]
rs2970575	0.94[EUR][1000 genomes]
rs2970576	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2970581	0.86[EUR][1000 genomes]
rs2970585	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2970586	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2970588	0.83[AFR][1000 genomes]
rs2970590	0.82[EUR][1000 genomes]
rs2970591	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2970594	0.82[EUR][1000 genomes]
rs2970596	0.82[EUR][1000 genomes]
rs2970597	0.82[EUR][1000 genomes]
rs2970598	0.82[EUR][1000 genomes]
rs2970600	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2970602	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2993524	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes]
rs2993525	1.00[CEU][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2993526	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2993527	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes]
rs2993530	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2993532	1.00[EUR][1000 genomes]
rs2993536	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2993537	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2993540	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs2993542	0.94[EUR][1000 genomes]
rs2993543	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2993546	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs2993549	1.00[CEU][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3009983	0.82[EUR][1000 genomes]
rs3009986	1.00[CEU][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3009990	1.00[EUR][1000 genomes]
rs3009992	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3009993	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3009994	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs3009995	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3009996	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3009998	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3009999	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3010000	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3010001	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3010008	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs3010014	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs3010015	1.00[CEU][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs3010017	1.00[CEU][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes]
rs3010018	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs3010019	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3010020	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3010021	0.82[EUR][1000 genomes]
rs3010022	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4397712	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4951427	1.00[CEU][hapmap]
rs4951430	1.00[CEU][hapmap]
rs4951437	1.00[CEU][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes]
rs6540717	0.82[EUR][1000 genomes]
rs6656826	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs6658972	1.00[CEU][hapmap];0.92[YRI][hapmap];0.81[EUR][1000 genomes]
rs6672030	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs6683980	0.82[EUR][1000 genomes]
rs6704044	0.82[EUR][1000 genomes]
rs7517565	1.00[CEU][hapmap]
rs7532954	0.82[EUR][1000 genomes]
rs7551276	0.82[EUR][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212112000-212170200	Weak transcription	Small Intestine	intestine
2	chr1:212112800-212202000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr1:212113600-212151600	Weak transcription	Psoas Muscle	Psoas
4	chr1:212113600-212170200	Weak transcription	Fetal Brain Male	brain
5	chr1:212114200-212185800	Weak transcription	Brain Angular Gyrus	brain
6	chr1:212115800-212151600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:212123400-212152600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:212123600-212159200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:212123800-212198200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr1:212125400-212170400	Weak transcription	Brain Anterior Caudate	brain
11	chr1:212125600-212159200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:212125600-212160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr1:212126000-212157000	Weak transcription	HUVEC	blood vessel
14	chr1:212129000-212167800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:212129400-212204000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:212130000-212157600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr1:212133200-212152600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:212133200-212170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:212133400-212152600	Weak transcription	NHLF	lung
20	chr1:212133400-212157000	Weak transcription	Esophagus	oesophagus
21	chr1:212133400-212159400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr1:212133400-212188200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:212133600-212151000	Weak transcription	Placenta	Placenta
24	chr1:212133600-212151000	Weak transcription	Right Ventricle	heart
25	chr1:212133600-212151600	Weak transcription	Lung	lung
26	chr1:212133600-212158400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr1:212133600-212159000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr1:212133600-212159000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr1:212133600-212159000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr1:212133600-212159800	Weak transcription	Brain Substantia Nigra	brain
31	chr1:212133600-212170000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:212133600-212170200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:212133600-212174400	Weak transcription	Spleen	Spleen
34	chr1:212133800-212158400	Weak transcription	Fetal Intestine Small	intestine
35	chr1:212133800-212159200	Weak transcription	Thymus	Thymus
36	chr1:212133800-212160000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr1:212133800-212170000	Weak transcription	Pancreas	Pancrea
38	chr1:212133800-212208000	Weak transcription	Gastric	stomach
39	chr1:212134000-212151200	Weak transcription	HepG2	liver
40	chr1:212134000-212159000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:212134000-212159000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr1:212134000-212207600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr1:212134000-212207800	Weak transcription	Colonic Mucosa	Colon
44	chr1:212134400-212151000	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr1:212134800-212151600	Weak transcription	Fetal Stomach	stomach
46	chr1:212136600-212204000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr1:212137200-212162600	Strong transcription	Dnd41	blood
48	chr1:212138800-212157600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr1:212139000-212159400	Weak transcription	Ovary	ovary
50	chr1:212139200-212153400	Weak transcription	Fetal Kidney	kidney

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