Variant report

Variant	rs2788141
Chromosome Location	chr1:212102153-212102154
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211907600..211909602-chr1:212100181..212103074,3	MCF-7	breast:
2	chr1:212081479..212083275-chr1:212101212..212103097,2	K562	blood:
3	chr1:212100825..212103790-chr1:212103837..212105355,2	K562	blood:
4	chr1:212101718..212103462-chr1:212208564..212211314,2	K562	blood:
5	chr1:212001096..212006492-chr1:212099928..212102658,5	MCF-7	breast:
6	chr1:212101758..212105730-chr1:212107353..212109879,3	MCF-7	breast:
7	chr1:212041148..212043526-chr1:212100738..212102576,2	K562	blood:

Variant related genes	Relation type
ENSG00000123684	Chromatin interaction
ENSG00000233626	Chromatin interaction
ENSG00000143493	Chromatin interaction
ENSG00000229258	Chromatin interaction
ENSG00000143476	Chromatin interaction

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs1017979	1.00[CEU][hapmap]
rs10863927	0.91[EUR][1000 genomes]
rs10863938	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11119809	1.00[AMR][1000 genomes]
rs11119818	0.91[EUR][1000 genomes]
rs11119819	0.91[EUR][1000 genomes]
rs1418047	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1539196	0.86[EUR][1000 genomes]
rs1586660	0.90[GIH][hapmap];1.00[TSI][hapmap]
rs2000168	1.00[CEU][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes]
rs2050953	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs2105322	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2788128	0.91[EUR][1000 genomes]
rs2788129	0.91[EUR][1000 genomes]
rs2788130	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2788131	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2788134	0.86[EUR][1000 genomes]
rs2788135	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2788136	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2788137	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2788142	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788144	1.00[EUR][1000 genomes]
rs2788146	1.00[EUR][1000 genomes]
rs2808376	1.00[EUR][1000 genomes]
rs2808377	1.00[EUR][1000 genomes]
rs2808380	1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2808382	0.81[GIH][hapmap]
rs2808383	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2808384	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2808387	0.91[EUR][1000 genomes]
rs2808388	0.90[GIH][hapmap];1.00[TSI][hapmap]
rs2808390	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs28475044	0.91[EUR][1000 genomes]
rs28851183	0.91[EUR][1000 genomes]
rs2970573	0.91[EUR][1000 genomes]
rs2970574	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2970575	0.91[EUR][1000 genomes]
rs2970576	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2970581	1.00[EUR][1000 genomes]
rs2970585	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2970586	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2970600	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2970602	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2993524	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs2993525	1.00[CEU][hapmap]
rs2993527	1.00[CEU][hapmap]
rs2993530	0.86[EUR][1000 genomes]
rs2993532	0.86[EUR][1000 genomes]
rs2993535	0.90[GIH][hapmap];1.00[TSI][hapmap]
rs2993536	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2993537	0.86[EUR][1000 genomes]
rs2993540	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2993542	0.91[EUR][1000 genomes]
rs2993543	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993546	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2993549	1.00[CEU][hapmap]
rs3009986	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs3009990	0.86[EUR][1000 genomes]
rs3009992	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3009993	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3009994	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs3009995	0.86[EUR][1000 genomes]
rs3009996	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3009998	0.86[EUR][1000 genomes]
rs3009999	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3010000	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3010001	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3010005	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3010008	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs3010014	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs3010015	1.00[CEU][hapmap]
rs3010017	1.00[CEU][hapmap]
rs3010018	1.00[CEU][hapmap]
rs3010022	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs3010029	1.00[TSI][hapmap]
rs4245744	1.00[CEU][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs4397712	1.00[CEU][hapmap]
rs4508084	0.91[EUR][1000 genomes]
rs4579825	0.91[EUR][1000 genomes]
rs4951424	0.86[EUR][1000 genomes]
rs4951427	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4951429	0.91[EUR][1000 genomes]
rs4951430	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4951432	0.91[EUR][1000 genomes]
rs4951437	1.00[CEU][hapmap]
rs4951547	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4951549	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4951551	1.00[AMR][1000 genomes]
rs60146950	0.86[EUR][1000 genomes]
rs6540707	1.00[AMR][1000 genomes]
rs6540710	0.91[EUR][1000 genomes]
rs6656780	1.00[AMR][1000 genomes]
rs6656826	1.00[CEU][hapmap]
rs6658972	1.00[CEU][hapmap]
rs6664386	0.81[EUR][1000 genomes]
rs6669803	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6672030	1.00[CEU][hapmap]
rs6672393	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6685282	0.91[EUR][1000 genomes]
rs6689342	0.91[EUR][1000 genomes]
rs6693275	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6697341	0.91[EUR][1000 genomes]
rs6699292	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6699981	0.91[EUR][1000 genomes]
rs7413558	0.91[EUR][1000 genomes]
rs7517565	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7545292	0.90[GIH][hapmap];1.00[TSI][hapmap]
rs7545377	0.91[EUR][1000 genomes]
rs7553567	0.84[EUR][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:212091000-212102200	Weak transcription	Esophagus	oesophagus
3	chr1:212094200-212103200	Weak transcription	Small Intestine	intestine
4	chr1:212094400-212102200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:212098800-212106000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:212100600-212104400	Enhancers	Fetal Intestine Small	intestine
7	chr1:212100600-212104800	Enhancers	Fetal Intestine Large	intestine
8	chr1:212100600-212109000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:212100800-212103400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:212100800-212103400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:212101000-212103600	Enhancers	HMEC	breast
12	chr1:212101200-212103400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:212101400-212102200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr1:212101400-212102200	Enhancers	Stomach Mucosa	stomach
15	chr1:212101400-212102800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:212101400-212103000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr1:212101400-212103000	Flanking Active TSS	K562	blood
18	chr1:212101400-212103200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr1:212101400-212103200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr1:212101400-212103600	Enhancers	Placenta	Placenta
21	chr1:212101400-212107800	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr1:212101600-212102200	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr1:212101600-212102200	Enhancers	Primary B cells from cord blood	blood
24	chr1:212101600-212102200	Enhancers	Duodenum Mucosa	Duodenum
25	chr1:212101600-212102200	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr1:212101600-212102200	Enhancers	HepG2	liver
27	chr1:212101600-212102800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:212101600-212103200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr1:212101600-212103200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr1:212101600-212103400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr1:212101600-212103400	Enhancers	Liver	Liver
32	chr1:212101600-212103400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr1:212101600-212103600	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr1:212101800-212102200	Enhancers	Adipose Nuclei	Adipose
35	chr1:212101800-212102200	Flanking Active TSS	NHEK	skin
36	chr1:212101800-212102400	Enhancers	Colonic Mucosa	Colon
37	chr1:212101800-212102600	Enhancers	Osteobl	bone
38	chr1:212101800-212102800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:212101800-212102800	Enhancers	Primary hematopoietic stem cells	blood
40	chr1:212101800-212102800	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr1:212101800-212102800	Enhancers	HSMMtube	muscle
42	chr1:212101800-212103000	Enhancers	H9 Cell Line	embryonic stem cell
43	chr1:212101800-212103000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr1:212101800-212103000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
45	chr1:212101800-212103000	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr1:212101800-212103000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr1:212101800-212103000	Enhancers	Gastric	stomach
48	chr1:212101800-212103200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr1:212101800-212103400	Flanking Active TSS	Hela-S3	cervix
50	chr1:212101800-212103600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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