Variant report

Variant	rs6685282
Chromosome Location	chr1:212007318-212007319
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212000642..212005751-chr1:212006753..212012287,13	K562	blood:
2	chr1:212006603..212008362-chr1:212010474..212013033,2	K562	blood:

Variant related genes	Relation type
ENSG00000229258	Chromatin interaction
ENSG00000123684	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10863927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119818	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11119819	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1418047	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1539196	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2000168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2050953	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2105322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788128	0.82[EUR][1000 genomes]
rs2788129	0.82[EUR][1000 genomes]
rs2788130	0.82[EUR][1000 genomes]
rs2788131	0.82[EUR][1000 genomes]
rs2788135	0.82[EUR][1000 genomes]
rs2788136	0.82[EUR][1000 genomes]
rs2788137	0.82[EUR][1000 genomes]
rs2788141	0.91[EUR][1000 genomes]
rs2788142	0.91[EUR][1000 genomes]
rs2788144	0.91[EUR][1000 genomes]
rs2788146	0.91[EUR][1000 genomes]
rs2808376	0.91[EUR][1000 genomes]
rs2808377	0.91[EUR][1000 genomes]
rs2808380	0.82[EUR][1000 genomes]
rs2808383	0.91[EUR][1000 genomes]
rs2808384	0.82[EUR][1000 genomes]
rs2808387	0.82[EUR][1000 genomes]
rs2808390	0.82[EUR][1000 genomes]
rs28475044	1.00[EUR][1000 genomes]
rs28801990	0.87[EUR][1000 genomes]
rs28851183	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2970573	0.82[EUR][1000 genomes]
rs2970574	0.82[EUR][1000 genomes]
rs2970575	0.82[EUR][1000 genomes]
rs2970576	0.91[EUR][1000 genomes]
rs2970581	0.91[EUR][1000 genomes]
rs2993540	0.82[EUR][1000 genomes]
rs2993542	0.82[EUR][1000 genomes]
rs2993543	0.91[EUR][1000 genomes]
rs3010008	0.82[EUR][1000 genomes]
rs4245744	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4508084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4579825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4951424	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4951427	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4951429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4951430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4951432	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4951547	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4951549	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60146950	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6540710	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6664386	0.89[EUR][1000 genomes]
rs6669803	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6672393	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6689342	1.00[EUR][1000 genomes]
rs6692119	0.83[EUR][1000 genomes]
rs6693275	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6697341	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6699292	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6699981	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7413558	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7517565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7545377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7553567	0.92[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212004600-212008000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:212004600-212008000	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr1:212004600-212008200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr1:212004600-212008200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:212004600-212008200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr1:212004600-212008600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:212004800-212007800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:212004800-212008000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr1:212004800-212008000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:212004800-212008200	Enhancers	Primary T cells from cord blood	blood
11	chr1:212004800-212008600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr1:212005000-212008200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:212005200-212007800	Weak transcription	Thymus	Thymus
14	chr1:212005200-212008000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr1:212005200-212008200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr1:212005200-212009600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:212005800-212007600	Enhancers	Primary hematopoietic stem cells	blood
18	chr1:212006200-212007400	Enhancers	Dnd41	blood
19	chr1:212006200-212007800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr1:212006400-212007400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:212006400-212007400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:212006400-212008000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr1:212007200-212007600	Weak transcription	K562	blood
24	chr1:212007200-212008000	Enhancers	GM12878-XiMat	blood

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