Variant report

Variant	rs10863927
Chromosome Location	chr1:212008913-212008914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212000642..212005751-chr1:212006753..212012287,13	K562	blood:

Variant related genes	Relation type
ENSG00000229258	Chromatin interaction
ENSG00000123684	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11119818	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11119819	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1418047	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1539196	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2000168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2050953	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2105322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788128	0.82[EUR][1000 genomes]
rs2788129	0.82[EUR][1000 genomes]
rs2788130	0.82[EUR][1000 genomes]
rs2788131	0.82[EUR][1000 genomes]
rs2788135	0.82[EUR][1000 genomes]
rs2788136	0.82[EUR][1000 genomes]
rs2788137	0.82[EUR][1000 genomes]
rs2788141	0.91[EUR][1000 genomes]
rs2788142	0.91[EUR][1000 genomes]
rs2788144	0.91[EUR][1000 genomes]
rs2788146	0.91[EUR][1000 genomes]
rs2808376	0.91[EUR][1000 genomes]
rs2808377	0.91[EUR][1000 genomes]
rs2808380	0.82[EUR][1000 genomes]
rs2808383	0.91[EUR][1000 genomes]
rs2808384	0.82[EUR][1000 genomes]
rs2808387	0.82[EUR][1000 genomes]
rs2808390	0.82[EUR][1000 genomes]
rs28475044	1.00[EUR][1000 genomes]
rs28801990	0.87[EUR][1000 genomes]
rs28851183	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2970573	0.82[EUR][1000 genomes]
rs2970574	0.82[EUR][1000 genomes]
rs2970575	0.82[EUR][1000 genomes]
rs2970576	0.91[EUR][1000 genomes]
rs2970581	0.91[EUR][1000 genomes]
rs2993540	0.82[EUR][1000 genomes]
rs2993542	0.82[EUR][1000 genomes]
rs2993543	0.91[EUR][1000 genomes]
rs3010008	0.82[EUR][1000 genomes]
rs4245744	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4508084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4579825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4951424	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4951427	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4951429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4951430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4951432	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4951547	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4951549	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60146950	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6540710	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6664386	0.89[EUR][1000 genomes]
rs6669803	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6672393	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6685282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6689342	1.00[EUR][1000 genomes]
rs6692119	0.83[EUR][1000 genomes]
rs6693275	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6697341	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6699292	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6699981	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7413558	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7517565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7545377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7553567	0.92[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212005200-212009600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:212008000-212012000	Weak transcription	GM12878-XiMat	blood

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