Variant report

Variant	rs2000168
Chromosome Location	chr1:211985358-211985359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211984186..211988892-chr1:211994677..211996452,5	K562	blood:
2	chr1:211976739..211979866-chr1:211985125..211987086,3	K562	blood:
3	chr1:211985189..211987577-chr1:212002510..212005409,2	K562	blood:

Variant related genes	Relation type
ENSG00000123684	Chromatin interaction
ENSG00000229258	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10863927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119809	1.00[AFR][1000 genomes]
rs11119818	1.00[EUR][1000 genomes]
rs11119819	1.00[EUR][1000 genomes]
rs1418047	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1539196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2050953	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2105322	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2788128	0.82[EUR][1000 genomes]
rs2788129	0.82[EUR][1000 genomes]
rs2788130	1.00[CEU][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs2788131	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2788135	1.00[CEU][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs2788136	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2788137	1.00[CEU][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs2788141	1.00[CEU][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes]
rs2788142	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2788144	0.91[EUR][1000 genomes]
rs2788146	0.91[EUR][1000 genomes]
rs2808376	0.91[EUR][1000 genomes]
rs2808377	0.91[EUR][1000 genomes]
rs2808380	0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs2808383	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2808384	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2808387	0.82[EUR][1000 genomes]
rs2808388	0.90[TSI][hapmap]
rs2808390	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs28475044	1.00[EUR][1000 genomes]
rs28801990	0.87[EUR][1000 genomes]
rs28851183	1.00[EUR][1000 genomes]
rs2970573	0.82[EUR][1000 genomes]
rs2970574	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2970575	0.82[EUR][1000 genomes]
rs2970576	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2970581	0.91[EUR][1000 genomes]
rs2970600	1.00[CEU][hapmap]
rs2970602	1.00[CEU][hapmap]
rs2993535	0.90[TSI][hapmap]
rs2993536	1.00[CEU][hapmap];0.89[TSI][hapmap]
rs2993540	1.00[CEU][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs2993542	0.82[EUR][1000 genomes]
rs2993543	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs3009992	1.00[CEU][hapmap]
rs3009993	1.00[CEU][hapmap]
rs3009994	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs3009996	1.00[CEU][hapmap]
rs3009999	1.00[CEU][hapmap]
rs3010000	1.00[CEU][hapmap]
rs3010001	1.00[CEU][hapmap]
rs3010005	1.00[CEU][hapmap]
rs3010008	1.00[CEU][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs4245744	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4508084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4579825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4951424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4951427	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4951429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4951430	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4951432	1.00[EUR][1000 genomes]
rs4951547	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4951549	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60146950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6540707	1.00[AFR][1000 genomes]
rs6540710	1.00[EUR][1000 genomes]
rs6656780	1.00[AFR][1000 genomes]
rs6664386	0.89[EUR][1000 genomes]
rs6669803	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6672393	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6685282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6689342	1.00[EUR][1000 genomes]
rs6692119	0.83[EUR][1000 genomes]
rs6693275	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6697341	1.00[EUR][1000 genomes]
rs6699292	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6699981	1.00[EUR][1000 genomes]
rs7413558	1.00[EUR][1000 genomes]
rs7517565	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7545377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7553567	0.92[EUR][1000 genomes]

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211915800-211991800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:211916800-211994200	Weak transcription	Fetal Brain Male	brain
3	chr1:211919200-212001200	Weak transcription	Gastric	stomach
4	chr1:211923000-211991800	Weak transcription	HSMM	muscle
5	chr1:211924000-212002400	Weak transcription	NHLF	lung
6	chr1:211938200-211999400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:211939600-211992600	Weak transcription	Esophagus	oesophagus
8	chr1:211939800-212002400	Weak transcription	HSMMtube	muscle
9	chr1:211940000-212000600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:211947400-212002400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:211950000-211987000	Weak transcription	Fetal Thymus	thymus
12	chr1:211951400-211992600	Weak transcription	Ovary	ovary
13	chr1:211952200-212003000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr1:211957600-211998800	Weak transcription	NHDF-Ad	bronchial
15	chr1:211957600-212000800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:211960800-211987600	Weak transcription	Pancreas	Pancrea
17	chr1:211961200-212002200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr1:211963600-211985800	Weak transcription	Hela-S3	cervix
19	chr1:211965800-211985400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr1:211965800-211992600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:211965800-212002200	Weak transcription	Primary T cells from cord blood	blood
22	chr1:211966400-211997400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr1:211966400-212002400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr1:211966600-211987200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr1:211966600-211988800	Weak transcription	Lung	lung
26	chr1:211966600-211992600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:211966600-211997400	Weak transcription	Spleen	Spleen
28	chr1:211967000-211998800	Weak transcription	Osteobl	bone
29	chr1:211970000-211986000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr1:211970000-211988800	Weak transcription	Adipose Nuclei	Adipose
31	chr1:211970800-211990600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr1:211971800-212002400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr1:211972400-211987600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr1:211973000-211986000	Weak transcription	Left Ventricle	heart
35	chr1:211973000-211987000	Weak transcription	Brain Angular Gyrus	brain
36	chr1:211973000-211987000	Weak transcription	Psoas Muscle	Psoas
37	chr1:211973200-211987600	Weak transcription	Right Ventricle	heart
38	chr1:211973400-211986000	Weak transcription	HepG2	liver
39	chr1:211973600-211986600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr1:211974000-212001200	Weak transcription	Small Intestine	intestine
41	chr1:211974600-211985400	Weak transcription	Fetal Heart	heart
42	chr1:211974800-211986200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr1:211974800-211987000	Weak transcription	Brain Anterior Caudate	brain
44	chr1:211974800-211987000	Weak transcription	NHEK	skin
45	chr1:211975200-211985400	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr1:211975200-211992000	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr1:211975400-211986000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr1:211975600-211985400	ZNF genes & repeats	GM12878-XiMat	blood
49	chr1:211976200-211986000	Weak transcription	Brain Substantia Nigra	brain
50	chr1:211976400-211987000	Weak transcription	Brain Inferior Temporal Lobe	brain

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