The 2.0 version of rSNPBase

Variant report

Variant rs6540707
Chromosome Location chr1:211957969-211957970
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211912600-211964600 Weak transcription NHEK skin
2 chr1:211912800-211970200 Weak transcription HMEC breast
3 chr1:211913800-211967800 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr1:211913800-211968800 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr1:211913800-211969600 Weak transcription Small Intestine intestine
6 chr1:211914000-211960400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr1:211914000-211965400 Weak transcription Thymus Thymus
8 chr1:211914000-211973600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
9 chr1:211915800-211991800 Weak transcription Muscle Satellite Cultured Cells --
10 chr1:211916200-211965400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr1:211916800-211994200 Weak transcription Fetal Brain Male brain
12 chr1:211917000-211970400 Strong transcription Monocytes-CD14+_RO01746 blood
13 chr1:211919200-212001200 Weak transcription Gastric stomach
14 chr1:211922600-211965600 Weak transcription Osteobl bone
15 chr1:211922800-211963000 Weak transcription Hela-S3 cervix
16 chr1:211922800-211964800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr1:211922800-211965400 Weak transcription Right Ventricle heart
18 chr1:211923000-211967200 Weak transcription Colonic Mucosa Colon
19 chr1:211923000-211991800 Weak transcription HSMM muscle
20 chr1:211923200-211963400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr1:211923200-211967200 Weak transcription Primary T regulatory cells fromperipheralblood blood
22 chr1:211923800-211960600 Weak transcription Psoas Muscle Psoas
23 chr1:211924000-212002400 Weak transcription NHLF lung
24 chr1:211924200-211960600 Weak transcription Primary T helper cells PMA-I stimulated --
25 chr1:211924400-211959000 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr1:211931600-211964800 Weak transcription Fetal Kidney kidney
27 chr1:211935800-211969000 Weak transcription Fetal Heart heart
28 chr1:211936000-211966800 Strong transcription Primary monocytes fromperipheralblood blood
29 chr1:211936400-211968200 Weak transcription HUES6 Cell Line embryonic stem cell
30 chr1:211938200-211999400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr1:211939600-211978200 Weak transcription Pancreatic Islets Pancreatic Islet
32 chr1:211939600-211992600 Weak transcription Esophagus oesophagus
33 chr1:211939800-212002400 Weak transcription HSMMtube muscle
34 chr1:211940000-211965200 Weak transcription Stomach Smooth Muscle stomach
35 chr1:211940000-212000600 Weak transcription Rectal Smooth Muscle rectum
36 chr1:211940200-211964600 Weak transcription Lung lung
37 chr1:211940800-211964800 Weak transcription Aorta Aorta
38 chr1:211943200-211971200 Weak transcription iPS-20b Cell Line embryonic stem cell
39 chr1:211943400-211972000 Weak transcription HUES48 Cell Line embryonic stem cell
40 chr1:211945800-211979000 Weak transcription Colon Smooth Muscle Colon
41 chr1:211946200-211984200 Weak transcription NH-A brain
42 chr1:211946800-211966600 Strong transcription Primary neutrophils fromperipheralblood blood
43 chr1:211947400-212002400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr1:211949400-211961400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr1:211950000-211987000 Weak transcription Fetal Thymus thymus
46 chr1:211950600-211971800 Weak transcription ES-I3 Cell Line embryonic stem cell
47 chr1:211950800-211971200 Weak transcription Placenta Placenta
48 chr1:211951200-211959600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr1:211951200-211964400 Weak transcription Skeletal Muscle Female skeletal muscle
50 chr1:211951400-211959200 Weak transcription Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015