Variant report

Variant	rs3009999
Chromosome Location	chr1:212160829-212160830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:212155560..212158137-chr1:212158738..212162212,3	K562	blood:
2	chr1:212152924..212154710-chr1:212160480..212162078,2	K562	blood:
3	chr1:212159561..212161760-chr1:212164473..212166374,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1017979	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10863933	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10863934	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10863938	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10863940	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1418047	1.00[CEU][hapmap]
rs2000168	1.00[CEU][hapmap]
rs2105322	1.00[CEU][hapmap]
rs2788128	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2788129	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2788130	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2788131	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2788134	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2788135	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs2788136	1.00[CEU][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2788137	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2788141	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2788142	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2788144	0.86[EUR][1000 genomes]
rs2788146	0.86[EUR][1000 genomes]
rs2808376	0.86[EUR][1000 genomes]
rs2808377	0.86[EUR][1000 genomes]
rs2808380	0.91[YRI][hapmap];0.94[EUR][1000 genomes]
rs2808383	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2808384	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2808387	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2808390	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2970573	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2970574	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2970575	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2970576	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2970581	0.86[EUR][1000 genomes]
rs2970585	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2970586	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2970588	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2970590	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2970591	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2970594	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2970596	0.82[EUR][1000 genomes]
rs2970597	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2970598	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2970600	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2970602	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993524	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2993525	1.00[CEU][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2993526	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2993527	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2993530	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993532	1.00[EUR][1000 genomes]
rs2993536	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993537	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2993540	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2993542	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2993543	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2993546	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2993548	1.00[AMR][1000 genomes]
rs2993549	1.00[CEU][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3009983	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3009986	1.00[CEU][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3009990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3009992	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3009993	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3009994	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3009995	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3009996	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3009998	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010000	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010001	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3010005	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3010008	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3010014	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010015	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010017	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010018	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010019	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010020	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010021	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3010022	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4397712	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4951430	1.00[CEU][hapmap]
rs4951437	1.00[CEU][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4951565	1.00[AMR][1000 genomes]
rs6540717	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6540718	1.00[AMR][1000 genomes]
rs6656826	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6658972	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6660399	1.00[AMR][1000 genomes]
rs6672030	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6683980	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6704044	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7517565	1.00[CEU][hapmap]
rs7532954	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7551276	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212112000-212170200	Weak transcription	Small Intestine	intestine
2	chr1:212112800-212202000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr1:212113600-212170200	Weak transcription	Fetal Brain Male	brain
4	chr1:212114200-212185800	Weak transcription	Brain Angular Gyrus	brain
5	chr1:212123800-212198200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:212125400-212170400	Weak transcription	Brain Anterior Caudate	brain
7	chr1:212129000-212167800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:212129400-212204000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:212133200-212170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:212133400-212188200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:212133600-212170000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:212133600-212170200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:212133600-212174400	Weak transcription	Spleen	Spleen
14	chr1:212133800-212170000	Weak transcription	Pancreas	Pancrea
15	chr1:212133800-212208000	Weak transcription	Gastric	stomach
16	chr1:212134000-212207600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr1:212134000-212207800	Weak transcription	Colonic Mucosa	Colon
18	chr1:212136600-212204000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr1:212137200-212162600	Strong transcription	Dnd41	blood
20	chr1:212146000-212185600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr1:212147000-212161200	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr1:212147800-212162400	Strong transcription	Hela-S3	cervix
23	chr1:212148800-212207600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr1:212149200-212180600	Weak transcription	HSMMtube	muscle
25	chr1:212149200-212199800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:212149400-212161400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr1:212149800-212172400	Weak transcription	Fetal Heart	heart
28	chr1:212150400-212161600	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr1:212151200-212161400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr1:212151800-212187000	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr1:212152800-212201600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr1:212153400-212203600	Weak transcription	Psoas Muscle	Psoas
33	chr1:212153600-212202600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr1:212154000-212170000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr1:212154200-212170000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr1:212155600-212170000	Weak transcription	Fetal Kidney	kidney
37	chr1:212155800-212161200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr1:212157000-212180000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr1:212157200-212161800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr1:212157600-212164400	Weak transcription	Esophagus	oesophagus
41	chr1:212157600-212183000	Weak transcription	HUVEC	blood vessel
42	chr1:212158000-212161400	Strong transcription	HSMM	muscle
43	chr1:212158000-212161600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr1:212158000-212162000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr1:212158400-212161800	Strong transcription	Fetal Thymus	thymus
46	chr1:212158600-212161400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr1:212158800-212161400	Strong transcription	Placenta	Placenta
48	chr1:212158800-212161800	Strong transcription	Primary hematopoietic stem cells	blood
49	chr1:212158800-212162400	Strong transcription	K562	blood
50	chr1:212159000-212161200	Strong transcription	NH-A	brain

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