Variant report

Variant	rs4397712
Chromosome Location	chr1:212238690-212238691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212237481..212240234-chr1:212245373..212246925,2	K562	blood:

Variant related genes	Relation type
ENSG00000143476	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1017979	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10863938	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2788130	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs2788131	1.00[CEU][hapmap]
rs2788135	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs2788136	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs2788137	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs2788141	1.00[CEU][hapmap]
rs2788142	1.00[CEU][hapmap]
rs2808380	0.91[YRI][hapmap]
rs2808383	1.00[CEU][hapmap]
rs2808384	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs2808390	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs2970574	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs2970576	1.00[CEU][hapmap]
rs2970585	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2970586	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2970600	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2970602	1.00[CEU][hapmap]
rs2993524	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs2993525	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs2993527	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs2993536	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2993540	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs2993543	1.00[CEU][hapmap]
rs2993546	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2993549	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs3009986	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs3009992	1.00[CEU][hapmap]
rs3009993	1.00[CEU][hapmap]
rs3009994	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs3009996	1.00[CEU][hapmap]
rs3009999	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3010000	1.00[CEU][hapmap]
rs3010001	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3010005	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3010008	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs3010014	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3010015	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs3010017	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs3010018	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3010022	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4951437	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs6656826	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6658972	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs6672030	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999738	chr1:212218618-212513690	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212209600-212253000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:212210800-212241200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:212214400-212278000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:212229600-212255400	Weak transcription	NHLF	lung
5	chr1:212229600-212266600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:212229800-212243400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:212229800-212255800	Weak transcription	Thymus	Thymus
8	chr1:212229800-212261000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:212229800-212261200	Weak transcription	Fetal Stomach	stomach
10	chr1:212229800-212261400	Weak transcription	Fetal Intestine Small	intestine
11	chr1:212229800-212263000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr1:212229800-212266400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:212230000-212238800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr1:212230000-212239400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr1:212230000-212242200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:212230000-212243400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:212230000-212249800	Weak transcription	NHEK	skin
18	chr1:212230000-212255200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr1:212230000-212255400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr1:212230000-212261200	Weak transcription	Osteobl	bone
21	chr1:212230000-212265200	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr1:212230400-212239400	Weak transcription	HUVEC	blood vessel
23	chr1:212230600-212243600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr1:212230800-212240600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr1:212230800-212261800	Weak transcription	Primary B cells from cord blood	blood
26	chr1:212231000-212255400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:212231200-212238800	Weak transcription	HepG2	liver
28	chr1:212231400-212243200	Weak transcription	HSMM	muscle
29	chr1:212231400-212253000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:212231400-212261800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:212231600-212241400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:212231600-212245200	Weak transcription	Fetal Lung	lung
33	chr1:212231800-212239600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr1:212233000-212255000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:212233000-212266400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:212234000-212265400	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr1:212234000-212265800	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr1:212234200-212267400	Strong transcription	Dnd41	blood
39	chr1:212236000-212241000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr1:212236000-212265200	Strong transcription	K562	blood
41	chr1:212236800-212249200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr1:212236800-212250200	Strong transcription	Fetal Thymus	thymus
43	chr1:212237000-212261200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr1:212237000-212266200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr1:212237200-212242600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr1:212237200-212267000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr1:212237400-212244200	Strong transcription	GM12878-XiMat	blood
48	chr1:212237400-212250000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr1:212237600-212243600	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr1:212237600-212246800	Strong transcription	H1 Cell Line	embryonic stem cell

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