Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30167314..30169877-chr13:30230772..30232474,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139514	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2263207	0.92[ASN][1000 genomes]
rs280905	0.92[ASN][1000 genomes]
rs280907	0.93[ASN][1000 genomes]
rs280908	0.88[ASN][1000 genomes]
rs489679	0.93[ASN][1000 genomes]
rs524368	0.93[ASN][1000 genomes]
rs529739	0.93[ASN][1000 genomes]
rs535141	0.93[ASN][1000 genomes]
rs538385	0.92[ASN][1000 genomes]
rs550984	0.93[ASN][1000 genomes]
rs563630	0.93[ASN][1000 genomes]
rs565279	0.89[ASN][1000 genomes]
rs61947189	0.85[ASN][1000 genomes]
rs648326	0.93[ASN][1000 genomes]
rs9506207	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9506213	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9506214	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9506215	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9508515	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9508524	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9551710	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9551713	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9551714	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv980	chr13:30200197-30236915	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv510577	chr13:30213612-30254316	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30222800-30232800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr13:30222800-30232800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:30228400-30233800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr13:30231000-30232800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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