Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30214449..30216128-chr13:30220444..30222656,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17625129	1.00[CEU][hapmap]
rs2669028	0.92[ASN][1000 genomes]
rs2776418	0.92[ASN][1000 genomes]
rs280906	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs280908	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs280941	0.87[ASN][1000 genomes]
rs280942	0.91[ASN][1000 genomes]
rs280943	0.90[ASN][1000 genomes]
rs280944	0.91[ASN][1000 genomes]
rs280945	0.89[ASN][1000 genomes]
rs482876	0.91[ASN][1000 genomes]
rs517178	0.93[ASN][1000 genomes]
rs566736	0.91[ASN][1000 genomes]
rs570095	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs571899	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs590377	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs606753	0.91[ASN][1000 genomes]
rs630273	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7991022	1.00[CEU][hapmap]
rs819400	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs819401	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9506207	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9506213	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9506214	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9506215	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9508524	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9551710	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9551713	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528336	chr13:30194288-30226498	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv980	chr13:30200197-30236915	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv510577	chr13:30213612-30254316	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3411311	chr13:30214552-30218450	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3422004	chr13:30214852-30223050	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv2638055	chr13:30215014-30222317	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30214800-30215600	Enhancers	HUVEC	blood vessel

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