Variant report

Variant	rs571899
Chromosome Location	chr13:30186958-30186959
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30168250..30170298-chr13:30186932..30188505,2	MCF-7	breast:
2	chr13:30166493..30170710-chr13:30184056..30189609,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139514	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs2263207	0.80[ASN][1000 genomes]
rs2669028	0.96[ASN][1000 genomes]
rs2776418	0.96[ASN][1000 genomes]
rs280905	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs280907	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs280908	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs280941	0.95[ASN][1000 genomes]
rs280942	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs280943	0.98[ASN][1000 genomes]
rs280944	0.98[ASN][1000 genomes]
rs280945	0.96[ASN][1000 genomes]
rs482876	0.98[ASN][1000 genomes]
rs489679	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs517178	0.97[ASN][1000 genomes]
rs524368	0.81[ASN][1000 genomes]
rs529739	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs535141	0.81[ASN][1000 genomes]
rs538385	0.80[ASN][1000 genomes]
rs550984	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs563630	0.81[ASN][1000 genomes]
rs566736	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs570095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs590377	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs606753	0.98[ASN][1000 genomes]
rs630273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs648326	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs819400	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs819401	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.99[ASN][1000 genomes]
rs9506207	0.93[ASN][1000 genomes]
rs9508515	0.90[ASN][1000 genomes]
rs9551710	0.91[ASN][1000 genomes]
rs9551714	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs571899	SLC7A1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30185600-30187000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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