Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs2669028	0.97[ASN][1000 genomes]
rs2776418	0.97[ASN][1000 genomes]
rs280905	0.81[ASN][1000 genomes]
rs280907	0.80[ASN][1000 genomes]
rs280908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs280941	0.94[ASN][1000 genomes]
rs280942	0.97[ASN][1000 genomes]
rs280943	0.98[ASN][1000 genomes]
rs280944	0.98[ASN][1000 genomes]
rs482876	0.98[ASN][1000 genomes]
rs489679	0.80[ASN][1000 genomes]
rs517178	0.96[ASN][1000 genomes]
rs524368	0.80[ASN][1000 genomes]
rs529739	0.80[ASN][1000 genomes]
rs535141	0.80[ASN][1000 genomes]
rs538385	0.81[ASN][1000 genomes]
rs550984	0.80[ASN][1000 genomes]
rs563630	0.80[ASN][1000 genomes]
rs566736	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs570095	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs571899	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs590377	0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs606753	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs630273	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs648326	0.80[ASN][1000 genomes]
rs819400	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs819401	0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9506207	0.89[ASN][1000 genomes]
rs9508515	0.89[ASN][1000 genomes]
rs9551710	0.91[ASN][1000 genomes]
rs9551714	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528336	chr13:30194288-30226498	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs280945	SLC7A1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30193400-30196400	Enhancers	NHDF-Ad	bronchial
2	chr13:30193800-30196400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr13:30193800-30197000	Enhancers	Osteobl	bone
4	chr13:30194200-30196400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr13:30194400-30196600	Enhancers	NHEK	skin
6	chr13:30194600-30196400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:30195000-30196400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:30195000-30198800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:30195800-30198800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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