Variant report

Variant	rs630273
Chromosome Location	chr13:30188823-30188824
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30183011..30186510-chr13:30187073..30191246,3	K562	blood:
2	chr13:30166493..30170710-chr13:30184056..30189609,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139514	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs2263207	0.80[ASN][1000 genomes]
rs2669028	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2776418	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs280905	0.81[ASN][1000 genomes]
rs280907	0.81[ASN][1000 genomes]
rs280908	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[EUR][1000 genomes]
rs280941	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs280942	0.99[ASN][1000 genomes]
rs280943	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280944	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs280945	0.98[ASN][1000 genomes]
rs482876	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs489679	0.81[ASN][1000 genomes]
rs517178	0.97[ASN][1000 genomes]
rs524368	0.81[ASN][1000 genomes]
rs529739	0.81[ASN][1000 genomes]
rs535141	0.81[ASN][1000 genomes]
rs538385	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs550984	0.81[ASN][1000 genomes]
rs563630	0.81[ASN][1000 genomes]
rs565279	0.85[EUR][1000 genomes]
rs566736	0.98[ASN][1000 genomes]
rs570095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.98[ASN][1000 genomes]
rs571899	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs590377	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs606753	0.99[ASN][1000 genomes]
rs61947189	0.85[EUR][1000 genomes]
rs648326	0.81[ASN][1000 genomes]
rs819400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs819401	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs9506207	0.91[ASN][1000 genomes]
rs9508515	0.90[ASN][1000 genomes]
rs9551710	0.91[ASN][1000 genomes]
rs9551714	0.81[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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