Variant report
| Variant | rs61947189 |
|---|---|
| Chromosome Location | chr13:30227259-30227260 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1104261 | 0.81[AFR][1000 genomes] |
| rs2089944 | 0.84[AFR][1000 genomes] |
| rs2263207 | 0.82[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2669028 | 0.82[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2776418 | 0.87[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs280905 | 0.91[ASN][1000 genomes] |
| rs280906 | 0.85[ASN][1000 genomes] |
| rs280907 | 0.91[ASN][1000 genomes] |
| rs280908 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs280941 | 0.81[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs280943 | 0.83[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs280944 | 0.82[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs482876 | 0.82[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs489679 | 0.91[ASN][1000 genomes] |
| rs524368 | 0.82[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs529739 | 0.91[ASN][1000 genomes] |
| rs535141 | 0.82[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs538385 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs550984 | 0.91[ASN][1000 genomes] |
| rs563630 | 0.82[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs565279 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs573080 | 0.81[AFR][1000 genomes] |
| rs630273 | 0.85[EUR][1000 genomes] |
| rs648326 | 0.91[ASN][1000 genomes] |
| rs819406 | 0.84[AFR][1000 genomes] |
| rs819408 | 0.83[AFR][1000 genomes] |
| rs9506213 | 0.85[ASN][1000 genomes] |
| rs9506214 | 0.85[ASN][1000 genomes] |
| rs9506215 | 0.85[ASN][1000 genomes] |
| rs9551713 | 0.85[ASN][1000 genomes] |
| rs9551714 | 0.82[AFR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv980 | chr13:30200197-30236915 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv510577 | chr13:30213612-30254316 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv498808 | chr13:30215837-30228124 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv899961 | chr13:30226924-30407273 | Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS | Chromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:30222400-30229400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr13:30222800-30232800 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 3 | chr13:30222800-30232800 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
