Variant report

Variant	rs1104261
Chromosome Location	chr13:30243542-30243543
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1023163	0.87[EUR][1000 genomes]
rs1093774	0.87[EUR][1000 genomes]
rs1093780	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2089944	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2089945	0.98[ASN][1000 genomes]
rs2137398	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2137399	0.98[ASN][1000 genomes]
rs2482085	0.98[ASN][1000 genomes]
rs2669033	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2776418	0.83[AFR][1000 genomes]
rs2776951	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2776965	0.98[ASN][1000 genomes]
rs280908	0.82[AFR][1000 genomes]
rs280920	0.87[EUR][1000 genomes]
rs280921	0.81[EUR][1000 genomes]
rs280943	0.81[AFR][1000 genomes]
rs280944	0.82[AFR][1000 genomes]
rs482876	0.81[AFR][1000 genomes]
rs497288	0.98[ASN][1000 genomes]
rs506502	0.98[ASN][1000 genomes]
rs515839	0.98[ASN][1000 genomes]
rs538385	0.86[AFR][1000 genomes]
rs563819	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs565279	0.81[AFR][1000 genomes]
rs572976	0.98[ASN][1000 genomes]
rs573054	0.98[ASN][1000 genomes]
rs573080	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577487	0.98[ASN][1000 genomes]
rs591390	0.98[ASN][1000 genomes]
rs605443	0.98[ASN][1000 genomes]
rs61947189	0.81[AFR][1000 genomes]
rs626702	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs819102	0.87[EUR][1000 genomes]
rs819106	0.98[ASN][1000 genomes]
rs819107	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs819108	0.95[ASN][1000 genomes]
rs819406	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs819407	0.95[ASN][1000 genomes]
rs819408	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510577	chr13:30213612-30254316	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30233800-30249800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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