Variant report
| Variant | rs819107 |
|---|---|
| Chromosome Location | chr13:30247214-30247215 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs1093780 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1104261 | 0.88[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2089944 | 0.86[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2089945 | 1.00[ASN][1000 genomes] |
| rs2137398 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2137399 | 1.00[ASN][1000 genomes] |
| rs2263207 | 0.89[AFR][1000 genomes] |
| rs2482085 | 1.00[ASN][1000 genomes] |
| rs2776951 | 0.80[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2776965 | 1.00[ASN][1000 genomes] |
| rs497288 | 1.00[ASN][1000 genomes] |
| rs506502 | 1.00[ASN][1000 genomes] |
| rs515839 | 0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs517178 | 0.84[AFR][1000 genomes] |
| rs524368 | 0.89[AFR][1000 genomes] |
| rs535141 | 0.89[AFR][1000 genomes] |
| rs563630 | 0.89[AFR][1000 genomes] |
| rs566688 | 0.85[AFR][1000 genomes];0.83[EUR][1000 genomes] |
| rs572976 | 1.00[ASN][1000 genomes] |
| rs573054 | 1.00[ASN][1000 genomes] |
| rs573080 | 0.88[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs577487 | 1.00[ASN][1000 genomes] |
| rs591390 | 1.00[ASN][1000 genomes] |
| rs605443 | 1.00[ASN][1000 genomes] |
| rs626702 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs819104 | 0.83[EUR][1000 genomes] |
| rs819106 | 1.00[ASN][1000 genomes] |
| rs819108 | 0.96[ASN][1000 genomes] |
| rs819406 | 0.86[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs819407 | 0.96[ASN][1000 genomes] |
| rs819408 | 0.81[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9551714 | 0.89[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv510577 | chr13:30213612-30254316 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv899961 | chr13:30226924-30407273 | Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS | Chromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv3520592 | chr13:30243601-30648554 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 4 | esv3520593 | chr13:30243601-30648554 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:30233800-30249800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
