Variant report

Variant	rs2137398
Chromosome Location	chr13:30236930-30236931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1093780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1104261	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2089944	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2089945	1.00[ASN][1000 genomes]
rs2137399	1.00[ASN][1000 genomes]
rs2263207	0.89[AFR][1000 genomes]
rs2482085	1.00[ASN][1000 genomes]
rs2776951	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2776965	1.00[ASN][1000 genomes]
rs280908	0.95[YRI][hapmap]
rs497288	1.00[ASN][1000 genomes]
rs506502	1.00[ASN][1000 genomes]
rs515839	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517178	0.84[AFR][1000 genomes]
rs524368	0.89[AFR][1000 genomes]
rs535141	0.89[AFR][1000 genomes]
rs563630	0.89[AFR][1000 genomes]
rs566688	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs570095	0.82[YRI][hapmap]
rs572976	1.00[ASN][1000 genomes]
rs573054	1.00[ASN][1000 genomes]
rs573080	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs577487	1.00[ASN][1000 genomes]
rs591390	1.00[ASN][1000 genomes]
rs605443	1.00[ASN][1000 genomes]
rs626702	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630273	0.87[YRI][hapmap]
rs819104	0.83[EUR][1000 genomes]
rs819106	1.00[ASN][1000 genomes]
rs819107	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs819108	0.96[ASN][1000 genomes]
rs819406	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs819407	0.96[ASN][1000 genomes]
rs819408	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9551714	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510577	chr13:30213612-30254316	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30233600-30238200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr13:30233800-30249800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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