Variant report

Variant	rs2811881
Chromosome Location	chr1:59228062-59228063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59217240..59220622-chr1:59226403..59228329,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FGGY-10	chr1:59227781-59228337	NONHSAT003520

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2760486	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs2760488	0.85[LWK][hapmap]
rs2811856	0.87[CEU][hapmap]
rs2811876	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2811877	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2811878	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2811879	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2811881	MYSM1	cis	parietal	SCAN
rs2811881	MYSM1	cis	cerebellum	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59221200-59228800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:59222200-59228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:59222200-59230400	Weak transcription	Lung	lung
4	chr1:59222600-59228600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:59222800-59229000	Weak transcription	Right Atrium	heart
6	chr1:59223000-59230200	Weak transcription	Aorta	Aorta
7	chr1:59223200-59228600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr1:59223200-59229600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:59226600-59239000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:59227000-59228400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:59227000-59228800	Enhancers	HepG2	liver
12	chr1:59227000-59228800	Enhancers	NHDF-Ad	bronchial
13	chr1:59227000-59231400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:59227000-59231400	Enhancers	HMEC	breast
15	chr1:59227200-59228600	Enhancers	HUVEC	blood vessel
16	chr1:59227400-59228600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:59227400-59231400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:59227400-59231400	Enhancers	NHLF	lung
19	chr1:59227600-59228600	Enhancers	NH-A	brain
20	chr1:59227600-59228800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:59227600-59230800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:59227600-59231400	Enhancers	Hela-S3	cervix
23	chr1:59227800-59228200	Enhancers	Osteobl	bone
24	chr1:59227800-59231000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:59227800-59231000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:59227800-59231000	Enhancers	HSMM	muscle
27	chr1:59227800-59231200	Enhancers	NHEK	skin
28	chr1:59228000-59228200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:59228000-59228200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr1:59228000-59228400	Weak transcription	Small Intestine	intestine

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