Variant report

Variant	rs2817202
Chromosome Location	chr6:24586173-24586174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24582804..24586516-chr6:24694820..24697864,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13204166	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13218075	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17248202	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2745333	0.88[EUR][1000 genomes]
rs2760133	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34111714	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34467467	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35380319	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4504469	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72841572	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
2	chr6:24583200-24586800	Enhancers	Fetal Intestine Small	intestine
3	chr6:24583600-24587200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:24583800-24601200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:24583800-24606600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:24584000-24587200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:24584200-24586600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:24584200-24600200	Weak transcription	A549	lung
9	chr6:24584400-24590400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:24584400-24601200	Weak transcription	Brain Angular Gyrus	brain
11	chr6:24584600-24588200	Weak transcription	Brain Anterior Caudate	brain
12	chr6:24584600-24588200	Weak transcription	Fetal Brain Female	brain
13	chr6:24585200-24588200	Weak transcription	Hela-S3	cervix
14	chr6:24585400-24587400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:24585600-24586400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr6:24585600-24586400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:24585800-24586400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:24585800-24586600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:24585800-24587000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:24585800-24587400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:24586000-24586400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:24586000-24588200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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