Variant report

Variant	rs13204166
Chromosome Location	chr6:24608687-24608688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs13218075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555090	0.89[CHB][hapmap]
rs17248202	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038135	0.89[CHB][hapmap]
rs2179515	1.00[CHB][hapmap]
rs2223590	0.82[CHB][hapmap]
rs2328846	0.89[CHB][hapmap]
rs2745333	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2760133	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2817200	0.87[CEU][hapmap]
rs2817202	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34111714	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34467467	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35380319	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4504469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4712835	0.89[CHB][hapmap]
rs6456622	0.89[CHB][hapmap]
rs6456624	0.89[CHB][hapmap]
rs6903205	0.89[CHB][hapmap]
rs6917660	1.00[CHB][hapmap]
rs6923652	0.89[CHB][hapmap]
rs6923867	0.89[CHB][hapmap]
rs6938069	1.00[CHB][hapmap]
rs72841572	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761101	0.89[CHB][hapmap]
rs7751357	1.00[CHB][hapmap]
rs7755563	0.89[CHB][hapmap]
rs7760198	0.89[CHB][hapmap]
rs9356940	0.89[CHB][hapmap]
rs9356941	0.89[CHB][hapmap]
rs9358777	1.00[CHB][hapmap]
rs9358783	0.88[CHB][hapmap]
rs9366573	1.00[CHB][hapmap]
rs9366575	0.89[CHB][hapmap]
rs9379678	0.89[CHB][hapmap]
rs9393570	1.00[CHB][hapmap]
rs9393571	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24607800-24613400	Weak transcription	Fetal Brain Female	brain
2	chr6:24608400-24612800	Weak transcription	Fetal Brain Male	brain

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