Variant report

Variant	rs13218075
Chromosome Location	chr6:24599246-24599247
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs13204166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555090	0.89[CHB][hapmap]
rs17248202	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038135	0.89[CHB][hapmap]
rs2179515	1.00[CHB][hapmap]
rs2223590	0.82[CHB][hapmap]
rs2328846	0.89[CHB][hapmap]
rs2745333	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2760133	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2817200	0.87[CEU][hapmap]
rs2817202	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34111714	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34467467	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35380319	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4504469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4712835	0.89[CHB][hapmap]
rs6456622	0.89[CHB][hapmap]
rs6456624	0.89[CHB][hapmap]
rs6903205	0.89[CHB][hapmap]
rs6917660	1.00[CHB][hapmap]
rs6923652	0.89[CHB][hapmap]
rs6923867	0.89[CHB][hapmap]
rs6938069	1.00[CHB][hapmap]
rs72841572	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761101	0.89[CHB][hapmap]
rs7751357	1.00[CHB][hapmap]
rs7755563	0.89[CHB][hapmap]
rs7760198	0.89[CHB][hapmap]
rs9356940	0.89[CHB][hapmap]
rs9356941	0.89[CHB][hapmap]
rs9358777	1.00[CHB][hapmap]
rs9358783	0.88[CHB][hapmap]
rs9366573	1.00[CHB][hapmap]
rs9366575	0.89[CHB][hapmap]
rs9379678	0.89[CHB][hapmap]
rs9393570	1.00[CHB][hapmap]
rs9393571	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv981110	chr6:24598222-24600537	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24583800-24601200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:24583800-24606600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:24584200-24600200	Weak transcription	A549	lung
4	chr6:24584400-24601200	Weak transcription	Brain Angular Gyrus	brain
5	chr6:24586800-24601600	Weak transcription	Fetal Intestine Small	intestine
6	chr6:24588800-24601000	Weak transcription	Fetal Brain Female	brain
7	chr6:24588800-24601600	Weak transcription	Brain Anterior Caudate	brain
8	chr6:24589000-24601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:24589000-24602200	Weak transcription	Hela-S3	cervix
10	chr6:24595400-24601000	Weak transcription	Brain Substantia Nigra	brain
11	chr6:24596800-24601000	Weak transcription	Brain Germinal Matrix	brain

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