Variant report

Variant	rs2823339
Chromosome Location	chr21:16906851-16906852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16899768..16901686-chr21:16905215..16907866,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10482873	1.00[EUR][1000 genomes]
rs11910098	1.00[EUR][1000 genomes]
rs2056895	1.00[EUR][1000 genomes]
rs2256239	1.00[EUR][1000 genomes]
rs2823314	1.00[EUR][1000 genomes]
rs2823315	1.00[EUR][1000 genomes]
rs2823316	1.00[EUR][1000 genomes]
rs2823317	1.00[EUR][1000 genomes]
rs2823331	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2823336	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2823388	1.00[EUR][1000 genomes]
rs2823391	1.00[EUR][1000 genomes]
rs2823456	1.00[EUR][1000 genomes]
rs28373635	1.00[EUR][1000 genomes]
rs28464100	1.00[EUR][1000 genomes]
rs28483497	1.00[EUR][1000 genomes]
rs28593618	1.00[EUR][1000 genomes]
rs28896184	1.00[EUR][1000 genomes]
rs56093324	1.00[EUR][1000 genomes]
rs7278140	1.00[EUR][1000 genomes]
rs7278746	1.00[EUR][1000 genomes]
rs73343627	1.00[EUR][1000 genomes]
rs73343632	1.00[EUR][1000 genomes]
rs73343642	1.00[EUR][1000 genomes]
rs73348660	1.00[EUR][1000 genomes]
rs73350208	1.00[EUR][1000 genomes]
rs73350215	1.00[EUR][1000 genomes]
rs73350217	1.00[EUR][1000 genomes]
rs73350219	1.00[EUR][1000 genomes]
rs73360728	1.00[EUR][1000 genomes]
rs9305643	1.00[EUR][1000 genomes]
rs9305644	1.00[EUR][1000 genomes]
rs9974347	1.00[EUR][1000 genomes]
rs9975955	1.00[EUR][1000 genomes]
rs9977402	1.00[EUR][1000 genomes]
rs9977408	1.00[EUR][1000 genomes]
rs9977669	1.00[EUR][1000 genomes]
rs9979818	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9980615	1.00[EUR][1000 genomes]
rs9983290	1.00[EUR][1000 genomes]
rs9984076	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9984269	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1064621	chr21:16881027-16937290	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16906600-16907200	Enhancers	Fetal Brain Male	brain
2	chr21:16906600-16907400	Flanking Active TSS	Primary hematopoietic stem cells	blood
3	chr21:16906600-16907400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr21:16906600-16907800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr21:16906800-16907000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr21:16906800-16907200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr21:16906800-16907200	Active TSS	Primary B cells from cord blood	blood
8	chr21:16906800-16907200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr21:16906800-16907200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr21:16906800-16907200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr21:16906800-16907200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr21:16906800-16907200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr21:16906800-16907400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr21:16906800-16907400	Flanking Active TSS	Dnd41	blood
15	chr21:16906800-16907600	Enhancers	Primary B cells from peripheral blood	blood

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