Variant report

Variant	rs56093324
Chromosome Location	chr21:16933778-16933779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16932624..16935111-chr21:16937107..16938655,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1007774	1.00[EUR][1000 genomes]
rs10482873	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11910098	1.00[EUR][1000 genomes]
rs12106443	1.00[EUR][1000 genomes]
rs16988682	1.00[EUR][1000 genomes]
rs16988797	1.00[EUR][1000 genomes]
rs2056895	1.00[EUR][1000 genomes]
rs2256239	1.00[EUR][1000 genomes]
rs2823314	1.00[EUR][1000 genomes]
rs2823315	1.00[EUR][1000 genomes]
rs2823316	1.00[EUR][1000 genomes]
rs2823317	1.00[EUR][1000 genomes]
rs2823336	1.00[EUR][1000 genomes]
rs2823339	1.00[EUR][1000 genomes]
rs2823388	1.00[EUR][1000 genomes]
rs2823391	1.00[EUR][1000 genomes]
rs2823456	1.00[EUR][1000 genomes]
rs2823458	1.00[EUR][1000 genomes]
rs2823466	1.00[EUR][1000 genomes]
rs28373635	1.00[EUR][1000 genomes]
rs28464100	1.00[EUR][1000 genomes]
rs28483497	1.00[EUR][1000 genomes]
rs28593618	1.00[EUR][1000 genomes]
rs28896184	1.00[EUR][1000 genomes]
rs725799	1.00[EUR][1000 genomes]
rs7278140	1.00[EUR][1000 genomes]
rs7278746	1.00[EUR][1000 genomes]
rs73343627	1.00[EUR][1000 genomes]
rs73343632	1.00[EUR][1000 genomes]
rs73343642	1.00[EUR][1000 genomes]
rs73348660	1.00[EUR][1000 genomes]
rs73350208	1.00[EUR][1000 genomes]
rs73350215	1.00[EUR][1000 genomes]
rs73350217	1.00[EUR][1000 genomes]
rs73350219	1.00[EUR][1000 genomes]
rs73360728	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9305643	1.00[EUR][1000 genomes]
rs9305644	1.00[EUR][1000 genomes]
rs9974347	1.00[EUR][1000 genomes]
rs9975955	1.00[EUR][1000 genomes]
rs9977402	1.00[EUR][1000 genomes]
rs9977408	1.00[EUR][1000 genomes]
rs9977669	1.00[EUR][1000 genomes]
rs9980615	1.00[EUR][1000 genomes]
rs9983290	1.00[EUR][1000 genomes]
rs9984076	1.00[EUR][1000 genomes]
rs9984269	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1064621	chr21:16881027-16937290	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2758530	chr21:16912646-17096678	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2758810	chr21:16912646-17096678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16932000-16934400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr21:16932200-16933800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr21:16932200-16934000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr21:16932200-16934400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr21:16932600-16936600	Weak transcription	Fetal Intestine Large	intestine
6	chr21:16932800-16934000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr21:16933000-16937200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr21:16933200-16936800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr21:16933200-16937200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr21:16933400-16933800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr21:16933600-16937200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links