Variant report

Variant	rs28373635
Chromosome Location	chr21:16924777-16924778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10482873	1.00[EUR][1000 genomes]
rs11910098	1.00[EUR][1000 genomes]
rs12106443	1.00[EUR][1000 genomes]
rs16988682	1.00[EUR][1000 genomes]
rs16988797	1.00[EUR][1000 genomes]
rs2056895	1.00[EUR][1000 genomes]
rs2256239	1.00[EUR][1000 genomes]
rs2823314	1.00[EUR][1000 genomes]
rs2823315	1.00[EUR][1000 genomes]
rs2823316	1.00[EUR][1000 genomes]
rs2823317	1.00[EUR][1000 genomes]
rs2823336	1.00[EUR][1000 genomes]
rs2823339	1.00[EUR][1000 genomes]
rs2823388	1.00[EUR][1000 genomes]
rs2823391	1.00[EUR][1000 genomes]
rs2823456	1.00[EUR][1000 genomes]
rs2823458	1.00[EUR][1000 genomes]
rs28464100	1.00[EUR][1000 genomes]
rs28483497	1.00[EUR][1000 genomes]
rs28593618	1.00[EUR][1000 genomes]
rs28896184	1.00[EUR][1000 genomes]
rs56093324	1.00[EUR][1000 genomes]
rs7278140	1.00[EUR][1000 genomes]
rs7278746	1.00[EUR][1000 genomes]
rs73343627	1.00[EUR][1000 genomes]
rs73343632	1.00[EUR][1000 genomes]
rs73343642	1.00[EUR][1000 genomes]
rs73348660	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73350208	1.00[EUR][1000 genomes]
rs73350215	1.00[EUR][1000 genomes]
rs73350217	1.00[EUR][1000 genomes]
rs73350219	1.00[EUR][1000 genomes]
rs73360728	1.00[EUR][1000 genomes]
rs9305643	1.00[EUR][1000 genomes]
rs9305644	1.00[EUR][1000 genomes]
rs9974347	1.00[EUR][1000 genomes]
rs9975955	1.00[EUR][1000 genomes]
rs9977402	1.00[EUR][1000 genomes]
rs9977408	1.00[EUR][1000 genomes]
rs9977669	1.00[EUR][1000 genomes]
rs9980615	1.00[EUR][1000 genomes]
rs9983290	1.00[EUR][1000 genomes]
rs9984076	1.00[EUR][1000 genomes]
rs9984269	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1064621	chr21:16881027-16937290	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758530	chr21:16912646-17096678	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2758810	chr21:16912646-17096678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16923400-16926000	Enhancers	Dnd41	blood
2	chr21:16924200-16925000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:16924400-16925600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr21:16924400-16925600	Enhancers	Fetal Thymus	thymus
5	chr21:16924400-16926200	Enhancers	Primary hematopoietic stem cells	blood
6	chr21:16924400-16926200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr21:16924600-16925600	Enhancers	Primary T cells from cord blood	blood
8	chr21:16924600-16925600	Enhancers	Primary T cells fromperipheralblood	blood
9	chr21:16924600-16925600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr21:16924600-16925600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr21:16924600-16925600	Enhancers	Thymus	Thymus
12	chr21:16924600-16925800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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