Variant report

Variant	rs73343642
Chromosome Location	chr21:16991009-16991010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16985973..16987583-chr21:16990550..16993331,2	MCF-7	breast:
2	chr21:16990382..16992239-chr21:17100657..17103328,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212564	Chromatin interaction
ENSG00000155313	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1007774	1.00[EUR][1000 genomes]
rs10482873	1.00[EUR][1000 genomes]
rs11910098	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12106443	1.00[EUR][1000 genomes]
rs16988682	1.00[EUR][1000 genomes]
rs16988797	1.00[EUR][1000 genomes]
rs16989451	1.00[EUR][1000 genomes]
rs16989491	1.00[EUR][1000 genomes]
rs2056895	1.00[EUR][1000 genomes]
rs2256239	1.00[EUR][1000 genomes]
rs2823314	1.00[EUR][1000 genomes]
rs2823315	1.00[EUR][1000 genomes]
rs2823316	1.00[EUR][1000 genomes]
rs2823317	1.00[EUR][1000 genomes]
rs2823336	1.00[EUR][1000 genomes]
rs2823339	1.00[EUR][1000 genomes]
rs2823388	1.00[EUR][1000 genomes]
rs2823391	1.00[EUR][1000 genomes]
rs2823456	1.00[EUR][1000 genomes]
rs2823458	1.00[EUR][1000 genomes]
rs2823466	1.00[EUR][1000 genomes]
rs2823475	1.00[EUR][1000 genomes]
rs2823485	1.00[EUR][1000 genomes]
rs2823490	1.00[EUR][1000 genomes]
rs28373635	1.00[EUR][1000 genomes]
rs28464100	1.00[EUR][1000 genomes]
rs28483497	1.00[EUR][1000 genomes]
rs28593618	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28896184	1.00[EUR][1000 genomes]
rs41384050	1.00[EUR][1000 genomes]
rs56093324	1.00[EUR][1000 genomes]
rs725799	1.00[EUR][1000 genomes]
rs7278140	1.00[EUR][1000 genomes]
rs7278746	1.00[EUR][1000 genomes]
rs73343627	1.00[EUR][1000 genomes]
rs73343632	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73346759	1.00[EUR][1000 genomes]
rs73348660	1.00[EUR][1000 genomes]
rs73350208	1.00[EUR][1000 genomes]
rs73350215	1.00[EUR][1000 genomes]
rs73350217	1.00[EUR][1000 genomes]
rs73350219	1.00[EUR][1000 genomes]
rs73360728	1.00[EUR][1000 genomes]
rs9305643	1.00[EUR][1000 genomes]
rs9305644	1.00[EUR][1000 genomes]
rs9974347	1.00[EUR][1000 genomes]
rs9975955	1.00[EUR][1000 genomes]
rs9977402	1.00[EUR][1000 genomes]
rs9977408	1.00[EUR][1000 genomes]
rs9977669	1.00[EUR][1000 genomes]
rs9980615	1.00[EUR][1000 genomes]
rs9983290	1.00[EUR][1000 genomes]
rs9984076	1.00[EUR][1000 genomes]
rs9984269	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2758530	chr21:16912646-17096678	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2758810	chr21:16912646-17096678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2762093	chr21:16948663-17145770	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1064683	chr21:16954570-17145758	Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv459099	chr21:16956866-17145011	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv587076	chr21:16956866-17145011	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv1062105	chr21:16956885-17141961	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv544380	chr21:16956885-17141961	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv1059500	chr21:16957752-17145758	Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	esv2830057	chr21:16960590-17113148	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16989000-16991200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr21:16989200-16991200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr21:16989200-16991200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr21:16989200-16991200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr21:16989400-16991200	Enhancers	HSMM	muscle
6	chr21:16989800-16991400	Enhancers	HSMMtube	muscle
7	chr21:16990000-16991200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr21:16990000-16991200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr21:16990000-16991200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr21:16990400-16991400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr21:16990800-16991200	Enhancers	A549	lung
12	chr21:16990800-16996800	Weak transcription	NHEK	skin
13	chr21:16991000-16996400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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