Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17409413..17411769-chr21:17412159..17413717,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12482831	0.82[ASN][1000 genomes]
rs12483563	0.84[ASN][1000 genomes]
rs12483594	0.84[ASN][1000 genomes]
rs12483611	0.84[ASN][1000 genomes]
rs12626424	0.89[ASN][1000 genomes]
rs13049528	0.89[ASN][1000 genomes]
rs1893382	0.84[ASN][1000 genomes]
rs1893383	0.84[ASN][1000 genomes]
rs2000700	0.88[ASN][1000 genomes]
rs2823546	0.81[ASN][1000 genomes]
rs2823549	0.84[ASN][1000 genomes]
rs2823550	0.84[ASN][1000 genomes]
rs2823570	0.88[ASN][1000 genomes]
rs2823571	0.88[ASN][1000 genomes]
rs2823572	0.88[ASN][1000 genomes]
rs2823573	0.88[ASN][1000 genomes]
rs2823574	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2823576	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2823578	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs457319	0.84[ASN][1000 genomes]
rs459355	0.84[ASN][1000 genomes]
rs56037345	0.86[ASN][1000 genomes]
rs56110468	0.84[ASN][1000 genomes]
rs6517682	0.84[ASN][1000 genomes]
rs7277086	0.83[ASN][1000 genomes]
rs7281157	0.89[ASN][1000 genomes]
rs73894724	0.88[ASN][1000 genomes]
rs73894727	0.97[ASN][1000 genomes]
rs8126662	0.88[ASN][1000 genomes]
rs9979920	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv913414	chr21:17383785-17459507	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv913415	chr21:17400916-17452276	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2830060	chr21:17400916-17459507	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv527854	chr21:17400916-17459507	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17410400-17411000	Enhancers	Primary hematopoietic stem cells	blood
2	chr21:17410400-17411000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr21:17410400-17411200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr21:17410400-17411200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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