Variant report

Variant	rs12626424
Chromosome Location	chr21:17408916-17408917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11088561	0.88[ASN][1000 genomes]
rs12482831	0.89[ASN][1000 genomes]
rs12483563	0.92[ASN][1000 genomes]
rs12483594	0.92[ASN][1000 genomes]
rs12483611	0.92[ASN][1000 genomes]
rs13049528	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1893382	0.92[ASN][1000 genomes]
rs1893383	0.92[ASN][1000 genomes]
rs2000700	0.93[ASN][1000 genomes]
rs2823545	0.88[ASN][1000 genomes]
rs2823546	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2823549	0.92[ASN][1000 genomes]
rs2823550	0.92[ASN][1000 genomes]
rs2823570	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823571	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823572	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823573	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823574	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823576	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823577	0.89[ASN][1000 genomes]
rs2823578	0.89[ASN][1000 genomes]
rs453844	0.80[ASN][1000 genomes]
rs457319	0.92[ASN][1000 genomes]
rs459355	0.92[ASN][1000 genomes]
rs56037345	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56110468	0.92[ASN][1000 genomes]
rs6517682	0.92[ASN][1000 genomes]
rs7277086	0.91[ASN][1000 genomes]
rs7279935	0.87[ASN][1000 genomes]
rs7281157	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73894724	0.93[ASN][1000 genomes]
rs73894727	0.87[ASN][1000 genomes]
rs8126662	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9979920	0.89[ASN][1000 genomes]
rs9984915	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv913414	chr21:17383785-17459507	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv913415	chr21:17400916-17452276	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2830060	chr21:17400916-17459507	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv527854	chr21:17400916-17459507	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17407600-17409400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:17408000-17409200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr21:17408600-17409600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr21:17408600-17409800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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