Variant report

Variant	rs7279935
Chromosome Location	chr21:17382916-17382917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17379808..17382152-chr21:17382746..17385605,3	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs11088561	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12482831	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12483563	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12483594	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12483611	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12626424	0.87[ASN][1000 genomes]
rs13049528	0.87[ASN][1000 genomes]
rs1740137	0.91[ASN][1000 genomes]
rs1893382	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1893383	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2000700	0.91[ASN][1000 genomes]
rs2205453	0.84[ASN][1000 genomes]
rs2404032	0.84[ASN][1000 genomes]
rs2823533	0.83[ASN][1000 genomes]
rs2823534	0.84[ASN][1000 genomes]
rs2823535	0.84[ASN][1000 genomes]
rs2823536	0.84[ASN][1000 genomes]
rs2823537	0.84[ASN][1000 genomes]
rs2823538	0.84[ASN][1000 genomes]
rs2823539	0.84[ASN][1000 genomes]
rs2823540	0.84[ASN][1000 genomes]
rs2823542	0.84[ASN][1000 genomes]
rs2823543	0.84[ASN][1000 genomes]
rs2823545	0.96[ASN][1000 genomes]
rs2823546	0.92[ASN][1000 genomes]
rs2823549	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2823550	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2823570	0.88[ASN][1000 genomes]
rs2823571	0.88[ASN][1000 genomes]
rs2823572	0.88[ASN][1000 genomes]
rs2823573	0.88[ASN][1000 genomes]
rs2823574	0.90[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs2823576	0.90[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs2823577	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2896726	0.84[ASN][1000 genomes]
rs366613	0.91[ASN][1000 genomes]
rs368760	0.80[ASN][1000 genomes]
rs388509	0.91[ASN][1000 genomes]
rs390503	0.84[ASN][1000 genomes]
rs399959	0.91[ASN][1000 genomes]
rs400590	0.91[ASN][1000 genomes]
rs405703	0.84[ASN][1000 genomes]
rs407058	0.91[ASN][1000 genomes]
rs412399	0.83[ASN][1000 genomes]
rs417411	0.91[ASN][1000 genomes]
rs419827	0.91[ASN][1000 genomes]
rs419867	0.91[ASN][1000 genomes]
rs420519	0.84[ASN][1000 genomes]
rs420571	0.91[ASN][1000 genomes]
rs420806	0.91[ASN][1000 genomes]
rs422504	0.89[ASN][1000 genomes]
rs433721	0.91[ASN][1000 genomes]
rs435166	0.84[ASN][1000 genomes]
rs444574	0.91[ASN][1000 genomes]
rs447456	0.89[ASN][1000 genomes]
rs447842	0.91[ASN][1000 genomes]
rs451121	0.88[ASN][1000 genomes]
rs453844	0.93[ASN][1000 genomes]
rs457319	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs459355	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56037345	0.91[ASN][1000 genomes]
rs56110468	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6517682	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7277086	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7281157	0.87[ASN][1000 genomes]
rs73894724	0.91[ASN][1000 genomes]
rs73894727	0.81[ASN][1000 genomes]
rs8126662	0.88[ASN][1000 genomes]
rs9978809	0.80[AFR][1000 genomes]
rs9979920	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9984915	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064664	chr21:17336936-17405756	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17380800-17384000	Weak transcription	Osteobl	bone

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