Variant report

Variant	rs9984915
Chromosome Location	chr21:17387513-17387514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11088561	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12482831	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12483563	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12483594	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12483611	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12626424	0.86[ASN][1000 genomes]
rs13049528	0.86[ASN][1000 genomes]
rs1893382	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1893383	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2000700	0.90[ASN][1000 genomes]
rs2823545	0.90[ASN][1000 genomes]
rs2823546	0.86[ASN][1000 genomes]
rs2823549	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2823550	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2823570	0.87[ASN][1000 genomes]
rs2823571	0.87[ASN][1000 genomes]
rs2823572	0.87[ASN][1000 genomes]
rs2823573	0.87[ASN][1000 genomes]
rs2823574	0.86[ASN][1000 genomes]
rs2823576	0.86[ASN][1000 genomes]
rs453844	0.82[ASN][1000 genomes]
rs457319	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs459355	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56037345	0.90[ASN][1000 genomes]
rs56110468	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6517682	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7277086	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7279935	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7281157	0.86[ASN][1000 genomes]
rs73894724	0.90[ASN][1000 genomes]
rs73894727	0.81[ASN][1000 genomes]
rs8126662	0.87[ASN][1000 genomes]
rs9979920	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064664	chr21:17336936-17405756	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv913414	chr21:17383785-17459507	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17387000-17389200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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