Variant report

Variant	rs2823545
Chromosome Location	chr21:17380549-17380550
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17379808..17382152-chr21:17382746..17385605,3	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11088561	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12482831	0.93[ASN][1000 genomes]
rs12483563	0.96[ASN][1000 genomes]
rs12483594	0.96[ASN][1000 genomes]
rs12483611	0.96[ASN][1000 genomes]
rs12626424	0.88[ASN][1000 genomes]
rs13049528	0.88[ASN][1000 genomes]
rs1740137	0.86[ASN][1000 genomes]
rs1893382	0.96[ASN][1000 genomes]
rs1893383	0.96[ASN][1000 genomes]
rs2000700	0.92[ASN][1000 genomes]
rs2205453	0.81[ASN][1000 genomes]
rs2404032	0.81[ASN][1000 genomes]
rs2823534	0.81[ASN][1000 genomes]
rs2823535	0.81[ASN][1000 genomes]
rs2823536	0.81[ASN][1000 genomes]
rs2823537	0.81[ASN][1000 genomes]
rs2823538	0.81[ASN][1000 genomes]
rs2823539	0.81[ASN][1000 genomes]
rs2823540	0.81[ASN][1000 genomes]
rs2823542	0.81[ASN][1000 genomes]
rs2823543	0.81[ASN][1000 genomes]
rs2823546	0.96[ASN][1000 genomes]
rs2823549	0.96[ASN][1000 genomes]
rs2823550	0.96[ASN][1000 genomes]
rs2823570	0.89[ASN][1000 genomes]
rs2823571	0.89[ASN][1000 genomes]
rs2823572	0.89[ASN][1000 genomes]
rs2823573	0.89[ASN][1000 genomes]
rs2823574	0.88[ASN][1000 genomes]
rs2823576	0.88[ASN][1000 genomes]
rs2896726	0.81[ASN][1000 genomes]
rs366613	0.86[ASN][1000 genomes]
rs388509	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs390503	0.81[ASN][1000 genomes]
rs399959	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs400590	0.86[ASN][1000 genomes]
rs405703	0.80[ASN][1000 genomes]
rs407058	0.86[ASN][1000 genomes]
rs417411	0.86[ASN][1000 genomes]
rs419827	0.86[ASN][1000 genomes]
rs419867	0.86[ASN][1000 genomes]
rs420519	0.81[ASN][1000 genomes]
rs420571	0.86[ASN][1000 genomes]
rs420806	0.86[ASN][1000 genomes]
rs422504	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs433721	0.86[ASN][1000 genomes]
rs435166	0.81[ASN][1000 genomes]
rs444574	0.86[ASN][1000 genomes]
rs447456	0.85[ASN][1000 genomes]
rs447842	0.86[ASN][1000 genomes]
rs451121	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs453844	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs457319	0.96[ASN][1000 genomes]
rs459355	0.96[ASN][1000 genomes]
rs56037345	0.92[ASN][1000 genomes]
rs56110468	0.96[ASN][1000 genomes]
rs6517682	0.96[ASN][1000 genomes]
rs7277086	0.95[ASN][1000 genomes]
rs7279935	0.96[ASN][1000 genomes]
rs7281157	0.88[ASN][1000 genomes]
rs73894724	0.92[ASN][1000 genomes]
rs73894727	0.82[ASN][1000 genomes]
rs8126662	0.89[ASN][1000 genomes]
rs9979920	0.93[ASN][1000 genomes]
rs9984915	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064664	chr21:17336936-17405756	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17380400-17380800	Enhancers	Osteobl	bone

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