Variant report

Variant	rs2823540
Chromosome Location	chr21:17372788-17372789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17372029..17374232-chr21:17375121..17376918,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11088561	0.81[ASN][1000 genomes]
rs13047689	0.84[ASN][1000 genomes]
rs1740137	0.93[ASN][1000 genomes]
rs2205453	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2404032	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823528	0.85[ASN][1000 genomes]
rs2823533	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823534	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823535	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823536	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823537	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823538	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823539	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823542	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823543	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823545	0.81[ASN][1000 genomes]
rs2823546	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2823570	0.81[ASN][1000 genomes]
rs2823571	0.81[ASN][1000 genomes]
rs2823572	0.81[ASN][1000 genomes]
rs2823573	0.81[ASN][1000 genomes]
rs2823574	0.86[JPT][hapmap]
rs2823576	0.86[JPT][hapmap]
rs2823577	0.85[JPT][hapmap]
rs2896726	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs366613	0.93[ASN][1000 genomes]
rs368760	0.83[ASN][1000 genomes]
rs375736	0.81[ASN][1000 genomes]
rs387709	0.81[ASN][1000 genomes]
rs388509	0.93[ASN][1000 genomes]
rs390503	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs399959	0.93[ASN][1000 genomes]
rs400590	0.93[ASN][1000 genomes]
rs405703	0.87[ASN][1000 genomes]
rs407058	0.93[ASN][1000 genomes]
rs412399	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs417411	0.93[ASN][1000 genomes]
rs419827	0.93[ASN][1000 genomes]
rs419867	0.93[ASN][1000 genomes]
rs420519	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs420571	0.93[ASN][1000 genomes]
rs420806	0.93[ASN][1000 genomes]
rs422504	0.92[ASN][1000 genomes]
rs433721	0.93[ASN][1000 genomes]
rs435166	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs444574	0.93[ASN][1000 genomes]
rs447456	0.92[ASN][1000 genomes]
rs447842	0.93[ASN][1000 genomes]
rs451121	0.91[ASN][1000 genomes]
rs453844	0.91[ASN][1000 genomes]
rs56037345	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs727131	0.85[ASN][1000 genomes]
rs7279935	0.84[ASN][1000 genomes]
rs7280084	0.84[ASN][1000 genomes]
rs8126662	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064664	chr21:17336936-17405756	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17369000-17376000	Weak transcription	Osteobl	bone
2	chr21:17370800-17376000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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