Variant report
| Variant | rs727131 |
|---|---|
| Chromosome Location | chr21:17348049-17348050 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs13047689 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1740137 | 0.81[ASN][1000 genomes] |
| rs2205453 | 0.85[ASN][1000 genomes] |
| rs2404032 | 0.85[ASN][1000 genomes] |
| rs2823528 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2823533 | 0.84[ASN][1000 genomes] |
| rs2823534 | 0.85[ASN][1000 genomes] |
| rs2823535 | 0.85[ASN][1000 genomes] |
| rs2823536 | 0.85[ASN][1000 genomes] |
| rs2823537 | 0.85[ASN][1000 genomes] |
| rs2823538 | 0.85[ASN][1000 genomes] |
| rs2823539 | 0.85[ASN][1000 genomes] |
| rs2823540 | 0.85[ASN][1000 genomes] |
| rs2823542 | 0.85[ASN][1000 genomes] |
| rs2823543 | 0.85[ASN][1000 genomes] |
| rs2896726 | 0.85[ASN][1000 genomes] |
| rs366613 | 0.81[ASN][1000 genomes] |
| rs375736 | 0.91[ASN][1000 genomes] |
| rs387709 | 0.91[ASN][1000 genomes] |
| rs388509 | 0.81[ASN][1000 genomes] |
| rs390503 | 0.85[ASN][1000 genomes] |
| rs399959 | 0.81[ASN][1000 genomes] |
| rs400590 | 0.81[ASN][1000 genomes] |
| rs407058 | 0.81[ASN][1000 genomes] |
| rs412399 | 0.84[ASN][1000 genomes] |
| rs417411 | 0.81[ASN][1000 genomes] |
| rs419827 | 0.81[ASN][1000 genomes] |
| rs419867 | 0.81[ASN][1000 genomes] |
| rs420519 | 0.85[ASN][1000 genomes] |
| rs420571 | 0.81[ASN][1000 genomes] |
| rs420806 | 0.81[ASN][1000 genomes] |
| rs422504 | 0.80[ASN][1000 genomes] |
| rs433721 | 0.81[ASN][1000 genomes] |
| rs435166 | 0.85[ASN][1000 genomes] |
| rs444574 | 0.81[ASN][1000 genomes] |
| rs447456 | 0.80[ASN][1000 genomes] |
| rs447842 | 0.81[ASN][1000 genomes] |
| rs7280084 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834050 | chr21:17146090-17348951 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1064664 | chr21:17336936-17405756 | Enhancers Active TSS Flanking Active TSS Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:17348000-17350600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
