Variant report

Variant	rs7280084
Chromosome Location	chr21:17352882-17352883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13047689	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2205453	0.84[ASN][1000 genomes]
rs2404032	0.84[ASN][1000 genomes]
rs2823528	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823533	0.85[ASN][1000 genomes]
rs2823534	0.84[ASN][1000 genomes]
rs2823535	0.84[ASN][1000 genomes]
rs2823536	0.84[ASN][1000 genomes]
rs2823537	0.84[ASN][1000 genomes]
rs2823538	0.84[ASN][1000 genomes]
rs2823539	0.84[ASN][1000 genomes]
rs2823540	0.84[ASN][1000 genomes]
rs2823542	0.84[ASN][1000 genomes]
rs2823543	0.84[ASN][1000 genomes]
rs2896726	0.84[ASN][1000 genomes]
rs375736	0.92[ASN][1000 genomes]
rs387709	0.92[ASN][1000 genomes]
rs390503	0.84[ASN][1000 genomes]
rs412399	0.85[ASN][1000 genomes]
rs420519	0.84[ASN][1000 genomes]
rs422504	0.81[ASN][1000 genomes]
rs435166	0.84[ASN][1000 genomes]
rs727131	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064664	chr21:17336936-17405756	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17352000-17353000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr21:17352600-17353600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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