Variant report

Variant	rs2404032
Chromosome Location	chr21:17376332-17376333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17376058..17376905-chr8:24546983..24547789,2	MCF-7	breast:
2	chr21:17372029..17374232-chr21:17375121..17376918,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11088561	0.81[ASN][1000 genomes]
rs13047689	0.84[ASN][1000 genomes]
rs1740137	0.93[ASN][1000 genomes]
rs2205453	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823528	0.85[ASN][1000 genomes]
rs2823533	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823534	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823535	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823536	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823537	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823538	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823539	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823540	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823542	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823543	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823545	0.81[ASN][1000 genomes]
rs2823546	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2823570	0.81[ASN][1000 genomes]
rs2823571	0.81[ASN][1000 genomes]
rs2823572	0.81[ASN][1000 genomes]
rs2823573	0.81[ASN][1000 genomes]
rs2896726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs366613	0.93[ASN][1000 genomes]
rs368760	0.83[ASN][1000 genomes]
rs375736	0.81[ASN][1000 genomes]
rs387709	0.81[ASN][1000 genomes]
rs388509	0.93[ASN][1000 genomes]
rs390503	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs399959	0.93[ASN][1000 genomes]
rs400590	0.93[ASN][1000 genomes]
rs405703	0.87[ASN][1000 genomes]
rs407058	0.93[ASN][1000 genomes]
rs412399	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs417411	0.93[ASN][1000 genomes]
rs419827	0.93[ASN][1000 genomes]
rs419867	0.93[ASN][1000 genomes]
rs420519	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs420571	0.93[ASN][1000 genomes]
rs420806	0.93[ASN][1000 genomes]
rs422504	0.92[ASN][1000 genomes]
rs433721	0.93[ASN][1000 genomes]
rs435166	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs444574	0.93[ASN][1000 genomes]
rs447456	0.92[ASN][1000 genomes]
rs447842	0.93[ASN][1000 genomes]
rs451121	0.91[ASN][1000 genomes]
rs453844	0.91[ASN][1000 genomes]
rs56037345	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs727131	0.85[ASN][1000 genomes]
rs7279935	0.84[ASN][1000 genomes]
rs7280084	0.84[ASN][1000 genomes]
rs8126662	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064664	chr21:17336936-17405756	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17375600-17376400	Enhancers	Hela-S3	cervix
2	chr21:17375600-17376600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr21:17375600-17376800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr21:17376000-17376600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr21:17376000-17377200	Enhancers	Fetal Stomach	stomach
6	chr21:17376200-17376400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr21:17376200-17376600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr21:17376200-17376600	Enhancers	Adipose Nuclei	Adipose
9	chr21:17376200-17376600	Enhancers	Brain Hippocampus Middle	brain
10	chr21:17376200-17376600	Flanking Active TSS	Osteobl	bone
11	chr21:17376200-17377200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr21:17376200-17377200	Enhancers	Fetal Lung	lung

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