Variant report

Variant	rs405703
Chromosome Location	chr21:17360092-17360093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17359620..17362061-chr21:17365249..17368112,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11088561	0.80[ASN][1000 genomes]
rs1740137	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2205453	0.87[ASN][1000 genomes]
rs2404032	0.87[ASN][1000 genomes]
rs2823533	0.88[ASN][1000 genomes]
rs2823534	0.87[ASN][1000 genomes]
rs2823535	0.87[ASN][1000 genomes]
rs2823536	0.87[ASN][1000 genomes]
rs2823537	0.87[ASN][1000 genomes]
rs2823538	0.87[ASN][1000 genomes]
rs2823539	0.87[ASN][1000 genomes]
rs2823540	0.87[ASN][1000 genomes]
rs2823542	0.87[ASN][1000 genomes]
rs2823543	0.87[ASN][1000 genomes]
rs2823545	0.80[ASN][1000 genomes]
rs2896726	0.87[ASN][1000 genomes]
rs366613	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs368760	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs375736	0.83[ASN][1000 genomes]
rs387709	0.83[ASN][1000 genomes]
rs388509	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs390503	0.87[ASN][1000 genomes]
rs399959	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs400590	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs407058	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs412399	0.88[ASN][1000 genomes]
rs417411	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs419827	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs419867	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs420519	0.87[ASN][1000 genomes]
rs420571	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs420806	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs422504	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs433721	0.93[ASN][1000 genomes]
rs435166	0.87[ASN][1000 genomes]
rs444574	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs447456	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs447842	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs451121	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs453844	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7279935	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064664	chr21:17336936-17405756	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17357800-17361000	Enhancers	HUVEC	blood vessel
2	chr21:17359000-17363600	Weak transcription	Fetal Kidney	kidney

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